Chr:
Chr4
Start:
31203502
End:
31214734
Strand:
+
Ref_name:
LOC4336986
Sequence
(XM_026024791.1):
AGCAGGCUGUGAAGAGGAUCAUCCGCUACGUUGCGGGGACUCUCGACCACGGUCUCUACUACCCGAGGUGUCCUGGCAAGGCACACUUCGUCGGGUACAGCGACAGCGACCACGCCGGCGACAUCGACACCAGCAAGAGCACGAGCGGGAUUCUCUUUUUCCUCGGCGAGUGCCUCGUUAGCUGGCAGUCAAUCAAGCAGCAGGUGGUGGCCCUGUCCAGCUGCGAGGCCGAGUACAUGGCAGCAUCCGCCGCUUCGACCCAGGCGCUCUGGCUUGCUCGACUGCUUAGUGAUCUCCUCGGCAGAGAUACUGGAGCGGUGGAGCUCAGGGUGGAUAGCAAGUCCGCUCUGGCCCUGGCAAAAAACCCCGUUUUUCACGAACGGAGCAAGCACAUCCGAGUGAGGUACCAUUUCAUCCGAAGCUACUUGGAGGAAGGGAGCAUCAAGGCGAGCUACAUCAACACCAAGGACCAGCUUGCGGAUUUGCUCACCAAACCCCUUGGGAGGAUCAAGUUCCUUGAGCUUUGCUCCCGGAUCGGGAUGGCUCAACUCUCCCACAAGACGGCGCACAAGACUUAGGGGGAGAAUGUAGGAAUAAGUCUUGGCUGGUUGGUCUUGGUCUUGUGGUGCCUUUUUCCUGCUUUUCAGCUUUCUAGGACAGCAUCUCUACUUUCAGUUUGGAUGCUCUAGGACAGUUAGGACAGCAGUUUGUUGAGAUGCUCUAGGACAGUUUGUUGGGAUGCUCUGCUCUAGGACAGUUUGUUGGGAUGCUGACAGCACCCUCUUAGACUAGCAUGGCUGCAUGGCUGCUACAAGCAGCUAUAAAUAUGUAUCCAAUCCUCUUUGGGAGGACAUGGCUUUUGUGUUUAGUGAAUGAAGAAAACCAGAAAAUUGCCCCAUCUCGAGUGCCAUCCUCUUCUCAAUGAGAGUAACCAUUGAAAUUCUAACAUCUGGUAUCAGAGCCACACUUUCCUGUAGGCUAAACAUCUCUUGUUCCACCCCUUUCCAAUGUCUUCCUGCUAUUCUUGAGGGUCCAGGAGGUGUUUGGUGUGAUGUUGAUGUUGUUGAAUUUUCGUACUACGGUGCACCGGCUCAAACACCUAAAGAGCAAAUGUUCAGUGAGCUUGUUGAUAAGUUAUGUGGCAGUGACGAAUGUAUUGGUUCAGGCUCUCAGGUUGCAAGCCAUGAAACUUUUGGUACUUUGGGUGCAAUUGUGAAACGGCGCACUGGCAACAAGCAGGUUGGUUUCCUCACUAACCAUCAUGUCGCGGUUGACUUGGACUACCCUAAUCAGAAGAUGUUUCAUCCAUUACCACCCAAUCUUGGGCCUGGCGUUUAUCUUGGAGCUGUUGAAAGAGCAACUUCUUUCAUCACAGAUGACGUUUGGUAUGGAAUCUAUGCUGGAACAAACCCAGAUAUGCCGCCCCAUUAUGGAUUUGCAGAGACAUUUGUACGAGCUGACGGUGCAUUUAUCCCAUUUGCUGAUGACUUUGACAUUUCCACCGUCACGACUGUAGUUAGGGGAGUCGGUGACAUUGGGGAUGUCAAGGUUAUAGAUCUGCAGUGUCCGCUCAAUAGCCUCAUAGGGAGGCAAGUAUGCAAAGUUGGCAGAAGCUCUGGUCACACAACUGGGACUGUGAUGGCCUAUGCCCUUGAGUACAAUGACGAGAAAGGAAUAUGCUUCUUCACAGACAUCCUUGUUGUUGGUGAGAACCGCCAAACAUUUGAUUUGGAAGGUGAUAGCGGAAGCCUUAUUAUCCUGACUAGCCAAGAUGGUGAGAAGCCGCGUCCAAUUGGAAUUAUAUGGGGUGGCACAGCAAAUCGUGGGAGGUUGAAGCUUACAAGUGAUCAUGGCCCUGAAAACUGGACUAGUGGGGUUGAUCUUGGCCGUCUACUCGACCGUCUGGAACUUGAUAUUAUCAUUACCAAUGAAUCACUCCAAGAUGCCGUGCAGCAGCAAAGAUUUGCUUUGGUGGCCGCCGUUACCUCAGCUGUUGGGGAGUCUUCCGGGGUGCCUGUCGCCAUCCCGGAAGAGAAGAUCGAAGAGAUCUUCGAGCCAUUGGGGAUCCAAAUCCAGCAACUGCCUCGCCAUGACGUGGCGGCCUCUGGAACUGAAGGGGAGGAGGCAUCCAACACGGUGGUCAAUGUGGAAGAGCACCAGUUCAUCUCAAACUUCGUCGGUAUGUCGCCCGUGCGCGACGACCAAGACGCUCCGAGGAGCAUCACCAACCUGAACAACCCCUCCGAGGAAGAACUCGCCAUGUCGCUCCAUCUGGGUGACCGAGAGCCCAAGCGGCUCCGUUCGGACUCCGGAUCAAGCCUUGACCUGGAGAAAUGAAGUGCAAAAAGUGCUGGUUCUGAAUUUCUGAUUCUGGUUCUUCAGAGUUUAUUGUCAUUGUGGACAGCCAAAAGUAGUAGUAGAUCAAAAGACCUCAUAUGCAGUUCAGAAAAAUUGAACCUGCAGUAAGCUUCGGUGAGCUUGAAUGGCUUUGGCAAGCAUAUCAUGUAACAUGAUGUAUUAUUAUUACUACAAUUGAUUCAGCCCCUUGUAGGAUGUUAGGUGCUAGUCCUGCAGUUUUGCUGUGCUCAUGAUCGUGAGACCUGAUAUACACCAUUGCCGGAUCCCUUCCUCUUUGUAGAAGAAGAAGAACAAUGUGCAGGGAAUUAUGAUAAUGAUGAUCUUUGAUCUAUUUCCCCCUAUUAUUAUUUACCAAUUAUCAGGUUUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
17.68%
HE_num:
HEP:
82.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.77
Avg Expression:
139.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.58967729876601 | 4.69896476776642e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.17708897483258 | 9.54682272728727e-33 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.21137194445889 | 1.34212762464338e-32 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -1.750921057462 | 4.57572326285109e-18 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.08307754939779 | 4.30170004831273e-23 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.82011157066655 | 4.21471128164426e-66 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.62593428723891 | 8.29466348198192e-24 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.02519031573532 | 1.04126185149202e-15 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.13526448927484 | 6.82440208353046e-33 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.10374971145105 | 5.17076542472646e-33 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.14336429067622 | 5.64967298450504e-29 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.13017426286384 | 2.93295757405433e-20 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.11048737042419 | 8.76747272670343e-11 |