Chr:
Chr4
Start:
23045536
End:
23057086
Strand:
-
Ref_name:
LOC4336058
Sequence
(XR_003241776.1):
GGAGGCGCAGGCCCAACCCACGCGCCCACUUGCCGGCGAUCGGCGGUGGCGGGUGGGCGGACGGUACACCUGUCGGGGUGCCCCGCAGCAGCGCCCCCCCUCUGAAAAUGGCGCCGGGGGCGACGUGGCCGCCGGAGCGCCGCUCGUCCGCCGCAUUUUUUAUUACUCCCCCGGAAACCCCACCCCACUUGGCGUGGGGGCGCCUGCUUUGCUUUGGGGGUUAUCUCUCUCUCUCUUCAUCUACAAAGAGCACCACCACCACCACACGCUCCGUCGCAUCCGACCAAAUCCAGCGCAAAAUCCAUCAUCGCCUCCCCCCCCUCGCGGCGGUCGUCGUCUUCGCGUCGUUCUCUCGGAGCCCCCCCUCGCUUAGAUUGGAUAGGAUCGCGCCAAUCGCGGUCUCGUCCUCCAUGGCAUCUGCCCCCCCCCCCCCUAGAUUUCCGUAGGAGGUAGCUAUCUAGCUUGCUGCCGCCCGUCGCAUGACCACGACCCUCGGAUCGUGGUGGCCGUUGGCUCCCCGAUUAGCUUCUCCCAUUGCCGCUCCUGUAGGCUGUAGCCCCAGCCGAUAUGCUUGCGUUGAUUUUGAUUCUGUGCCGCCUAGCGACCCGCCUCUCUUCAUCUAGGGUUCAACCUUCGAGCCGGCUUCUCAGUUGCUGCAAGUGGAGGCGGCAAGCUAGAGACAGCAACUGCAUAUCUUGCAAGAAAAUCGUAAGUCUUAUUAUUACUAUCGCUAAAUUAUUUUGCUAGUGUAGUUAAUCACCAAAACAUUAUCUUCUCUACCCCACACACUAUUAAAACAUGAUUAAUUCACUCCCUUUGACACUUGUCUCCUUGUAGAUGCCAUCAUACUCUACUCACUCCGUCCCAAAAUAUAAGCAUUUUUAGCUAUGAAUUUGGACAACCGUGUGUCCAGAUUCAUAGCCAAAAGUUAUAUUUUGGGACAGAGGUAGUAUGUUAAUAUUAUUAUUGGAACUGUUCAUGAAUUUUACUUUAUUUUUGAAAUUUUCCAUGUCUUUGCAUGCAUUAUUUCAUUUUCAUAUCUCGGGGGAUUAGGCGCUCCCAACCUAGUGAAGUACACAUUACAUAUUCCAAGAAUUAUUUGAAACAAGUUAUGAUGUAAUUAUCACCCAAGGUCUCGUGAUUAGUAUAAAAUAGUUUUUCUGAUAUACAUAACUAAUAAUCAUUCUAUCCGGUGGUACAAGUUAGUAACAUGAAAGUGCAUGGGUAUUUAAGAGGCACAAUUAGAGGUGUAAGGUCCAAGGUCUUGGGUCCUAGACAAAAUUAUUCUUUUGCUAUAAACUUUCUGGACAUAUUACAUUGAUGUGCUUCUGAUUAUUUUGUGUGUAUAAAGUUUUGCUAAAAGUACUAUUUGCUACCCGACCCCUCUCUCCCCCCCCUCCCCCCUCCCCCUUUCGGAGAAGAUGGCUUGGGGAGGUUACGAGCACUUGGCUCUGAUACCAGCUCUUGCCCAGGCAGUGCUAGGGGUCUAGUCACCAGAUAUGAGGAUAGGAAUGCAGCAUCUAGAUGCAAUGUUGGAUGUGAGAUUGGUAUGUGGCAACUGGAUGGUAAUCCAGUUUGUUGAUUUUCUUAAAAAAUAAUUAUGCAAACAUAAAUGCAGUACAUAAAGUAAAGACAAACUGUAAAUACCAUAACAUGGUAGUUUUAUAUAGAAUGGUCCAUGUGUUCAUUCAUAUACCUUGAUAGGUUGAAGAUAGAUCCUUCUGAAGAUUACACCAAGGACUUGGUACAACACGUUCAUAAUUAUACAUGUACAGGACUCUCACAAGGACUCUUACAUAGACUCUCACACUUGACUUUCAUAAGUCUUCUAUUUAGGUUAUAACUAUACUACUAACACUUAGAUGGAGUGGAGUGAAGUGUGAUGGCUGGUGGAGAGGUGAGAGGAAUGGUUGAGUGAGAUGUGUUUUGGUUGUGUUGUGUUCCUGAGCCCCUUAUAUAGGACUUGGUGAAGAAUCUUUAUGAUAUAUCCAUUUGACUUUAAGGGGUUUUAUGAUGUCCCUUUAGAUUUCACGGAGAGAAUCUUUGGUGAUGACGCUUUUGACCUUCAAUAAAAGUAUCAUAAUAUCGCCUUUUGACUAUAGGCAUAUCUUAUCUUGAAUAGUGUAGAUUCCUUAUCUUCAAUAGUGUUUUUUGUCGGGGAUGACAAGAUCUUCAUUCAUUAUCUUCACUGUAUAUCAUGGGUGCCAAUUGCAUCAUGUCAAUUUUUGAUGGCUCUGUUUUCUGAUACCACUGAGCCAGGCUUCUGUAGUAAAAUCUGGUUUAAUUAUACGUCCUGCUCCCUUGAAAUAUUCACAACUUUGGUUAUAAUAUCUGCUAAUAAAAAUCCUUGUGAUCUUGUUUUGGAAAACCAACUGAUAUUCAUAAUCUAUGGUAAUAGCUUCUUCAAUUUCUGCAGCUUCAGAAAAUAAUCUCCAAUUCUCAUGAUUUGCAAUCAUUGUAUACAUUUCUUCUUGUUCAUCUGAUAAUUUGCUAGGACCGCCUUCUUGAAAAUUAAAUUGUUUAUUCAUGAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAGUGAAUUGCUGGACGAGCAUGUGGUGUGAAUUUAGGUGGUAUGGAGGAGAAGAUAAUCCUGUAUCUUCCAUUUCUAAGUCUUCUACAGACAUCUUUUACAGCGCUUCCUAAAUCAAAUUGAAGAAUCCGAUCUAGUGUUGCAUAGAUAGAAUUGACAAGACCAUGAUCUAUAAUGGUUUGGAGAGAUAUUUCAUCAUGGUUGUAUGUGGGUAAGUUUCGGAAUCUUUGGAGAUUUAUUUCGGCUUUGAGAACCAUGAAUCUAUAGGAUGGGUCAGAGAUUACCUGAUGAUCAUCUAACCUUAAGAUAGGAAGCAUGUAUAUGAUUACUUGUAUGGCUGGGUUUCUUUCUCUGCCUUAUAAGAGAUGAAAGAAAUAAUCUUGAAAUAUUUUCAUUUGUCUCUCUUUAAACUUUUGCCAAACAAGGUCGAGGAUGUCUUGCCCAAAGCAAGAUAAAAUUUGCUCUGUCUUGAAGCUCAAUCUGGGUUGGAGAUAUUCAUAUGCGGUACUCAUGGGAUUUUGGCCUUUAAGUUUCUUUUGGUAAGAAUCUUUGUAGGCACACGGUCUACAUGGUGCUAUUGGCUGGGUCCGAAGUAUAUAUUGUGGAAGGAGGGAAUUGGGAUGAUUAUGCAAUAUAUAUGGUGUUUGGGCAAGAGCUGGUAUCAAAGGCAAGAGCAACUUUUUGUGACAAGUCAACAAGCACGAUCGCAGCACCUAAACGCCUUGCGGUGAUAUGGAGUCGCCAACCACCCGAGACCUGACGAAAACGGAGUCUAACUCAGACUCUACCGGUCAGACCGGCCACAUGCCACCGGUCUGACCGGCUCUCCGGCGGCGGUCUGACCGGCCCACAUAUGGCGGUCAGACCGGCCCUUUCUGGAGGAAACCGGCAGAGCCCCAAACUUUCGCAAUUUUUCCUAUUUCGACCCUAGGUGCCAAAUUUGGGUGUAAACAACAACCAAGAUGAAAUAUCUUUCCAAACCUCUCCAAACCAUUAUAGAUCGUGGUCUUGUCAAUUCUAUCUAUGCAACACUAGAUCAGAUUCUUCAAUCUGAUUUAGGAACGUUGUAAAAGAUGUCUGUAGAAGACUUAUACGGUGAAGAUAAUGAAUGAAGAUCUUGUUAUCCUCGACAAAAAACACUAUUGAAGAUAAGGAAUCUACACUAUUCAAGAUAAGAUAUGCCUAUAGUCAAAAGGCGAUAUUAUGAUACUUUUAUUGAAGGUCAAAAGCGUCAUCACCAAAGAUUCUCUCCGUGAAGUCUAAAGGGAUAAUCAUAAAACCCCUUAAAGUCAAAUGGAGAUAUCAUAAAGAUUCUUCACCGAGUCCUAUAUAAGGGGCUCAGGAACACAACCACAACACAUCUCACUCAACCAUUCCUCUUCACCUCUCCACCAGCCAUCACACUUCACUCCAUCUAAGUGUUAGUAGAUAGUUAUAGUUAUAACCUAAAUAAAAGACUUAUGAAAUUCUAAGUGUGAGAGUCUAUGUAAGAGUCCUUGUGAGAGUCAUGUACCUGUAUAAUUACGAACGUGUUGUACCAAGUCCUUGGUGUAAUCUUCAGAAGGAUCUACCUUCAACCUAUCAAGGGUUUUAUGGCCAUACCGAUGAUUUUCUUGCAAGCUGUGCAGUUGUUGUCUCAAGCUUGCUGCCUCCCUUUGCCAGAACUAUUGGAUAUGAAAACAGAGUCAAGAAAUGCAGAAUCCAGGUUUGCCAAAAGCAGCAAUAUAAAUAUGUUGUGUAUACCCAUAGAAACAUGCUGGGUUAUCAACUCACUAGUUUUUUUUUAAAAAAAAGGAAACUCAAUUACAUUAGACAAGAAGACUAUUUGAACUGAGGAAGUUAUUGUGUAUGGUAAAAGAAGUAACAAGAGGCAAACAAAGAAAUUUGUUGUAAACAAAUAAGGGAAGUAGUAUUAUCUUUCCAGUUUGAAGACAGUUUUUUUUCCAGAUAAGACGAUGAGCUACCAACUCUAUUGAAUUUGGUACUCCAUUAUCAGUCCUCGUUUUGCGGGGUGUUACCCCCUAUUGUAAAAAGCUUGUUUGUCUAAGCAAAAUGCUUCCAAGUCCCACCAAAGCUAGAUUAACUACAAAGUAUCUGCAGAGUGCACAAGUCAGGUAAAAAACUUGUUUGUCUAAGCAAAAUGCUUCCAAGUCCCACCAAGCUAGAUUAACUACAAAGUAUCUGCAGAGUGCACAAGUCAGAUAAAAAACUUGUUUGUCUAAACAAAAUGCUCCCAAGUCCCACCAAGCUAGAUUAACUACAAAGUAUCUGCAGAGUGCACAAGUCAGGUAAGUGAUGAUUAUAUCAUCCUGGUACAAGCUUUAUUGCGGUGAAAGAUAAGCAGUUAGUCUGAAAUCUGUACAGAUCUGUCAGCUGUUACCGAAGCAAAAGGUUCAAUGUGAACUUAAAGAUGCAGUACUGAUCCUUUUAAGAGGAUUUAACACAGAUUUAACAGGGUGUUCUGUAUGCGAGCUGUGAUGGGAUGGUUCUCUUCAGAAGCAUUUUAUUUUAACUAAAUUCAGAAGCAUUUCGAUGGCAUGAGGACUGUUCGAUUGACAAUUUGUAUGUACAUUUCCACCGUUUACGCAGCUUAGGAAUUGGACCAUAAUUAGUUGUGUACCUGCAAGUUUUGUAUACGAAUUAUCCUGAAGGGUGUUCGGUGGAUUGAAUAUUGCCCUUUUGGUUGUUUUGCGCAUCGUGGAUGCGGCUGCUCUACAUUUUUCUUAUAGGAAAUCAGCUUCUGAUAAAAGGGAUUAUUAUCUGUGUGAUCUACUGAUCGAUAUUUUACCCCUCUAGCUGAGUUUAUUAAGCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
42.07%
HE_num:
HEP:
57.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.58
Avg Expression:
44.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.10918157411533 | 6.18425820298597e-32 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.07477720703919 | 5.87143462817016e-24 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.99927655604803 | 3.17129055370088e-71 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.08780706261751 | 3.63430837324914e-05 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.0741643902014 | 8.42976891540636e-06 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.89615697714073 | 9.15774116437464e-17 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.46396250974118 | 4.94455621761442e-66 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.02423236845487 | 1.17671011235236e-109 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.06804723636509 | 6.38447204891753e-33 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.60034504786613 | 1.79951886714754e-53 |