Chr:
Chr4
Start:
21856885
End:
21867885
Strand:
-
Ref_name:
LOC4335924
Sequence
(XM_015781185.2):
AUUUCUGGCCACAUCAAAAAACCGCUAUAAAUUUCGCCUGAGCCACGCGUCGCUCCCUCUCCUCUUCUCCGUUGCUGCCGCCUGCGUUUCUCCGAUUUCUCCCCCCUCCGUCCUCCUCUCGCCGUCGCUGCCUCGCCUCCGGCCCGCGCCACCGGAGCCCGGCGAGGCCGCCGGGCGCGCGCCGCUCGCUCCGCCCCCGCUGGAACCUCCGACUCCGCAGCUACUCCCCCGGCGAGCGUCGCCUUUUUUGCGGCGCGCCGUCGGCCGUAGCGUUCCACCCGGGCCCGGACUUCUGGGGAUGCAAUGCCUCUCUUAAAAAGGAGACCGUUCUUCUUACUGGAUCCGCCAAAGGACUUGAAUCCAGAGGACAAGGUGUUCCAAGUUCGGUAUACCAAGGAGAUAUUCCGAGAUUACCAGGAAUACCUGAAUAGGGUAAACCUUUAUCGUGAAAGAGUUUGGACAUGUAAGGUGUCUGGAAAAUCAAAUUUAACAUAUGAGGAAGCGCUGGUCUCAGAGCAUCAUGCUGCAGAGAAGGCUCAACAGUUGCCAAGAGAGUUAAUAGCGCCUGUUCUACAUAUGAUUCAAUACAGCACUCUUAGCUUGACUGACCUUGUCAACAAAAUAUACAGUAUUCUCCAAGAAGACUUUUUUGAAGGAUUAGAACUAAAUGGUAGAAAAGAUGGUUCUGUGUCUGCUUGCAAGAUCUUAAAGGUUAUUAUUGGCUCUGGUAACACCAAGAUGUAUGAGGUGGGUUGGAUUGGUCAGGACAAUGCAGAGACUAACACUUCAGUUCUUCAAGCCGAUGAUCUAGUAAUUCGCAAGAAGGCACGUGCUAGUCGUAGCAUGCUGAAAAUAUAUAUUAGGGAGUCAACAUCACAGAAUUCCCCAUGGAUUAUACAUGCAAAUCUUGCAAAGAAAUAUGGAAUACCCACUGAGCCCCCAAAAGACUUAUUGAAUGGUCAAGGGUUGCCAAAACUGAGGAGAGGACUCGAGAAUGGAACCACAGAUGAUGUCAGAAAAAAAUUGAAGAAAGGUGAGCCAAUUGAUGAUCUUUUAUUAAGGCCUACAGCAGAUGAUCCCAGUCUGUCAAAAAGACGUCCACUGUCUACAGAUUUCAGAGUGCCUGUAGAUUCUGUUGGGGAUCUACUUAUGGUUUGGGACUUCUGCAUGACUUACGGGAGGAUUUUAUGCUUGUCUCCAUUUUCCCUCUCGGACCUGGAGAAUGCAAUCUGCCACAAAGAAAGCAACCUUGUUCUUCUUGUGGAAUUACAUGCUGCACUCUUCCAUUUGCUCAUUAAAGAUGGAGGCGGGUAUUUUAUGUUUCUCCAGAACAAGAGAAGGAAAUUAAAGGUAACAUUGGUCACCUGGGCUGAGUAUCUAUGUGAUUUCUUGGAAAUGACAAGUAAAGAAGAAUUCUCCAGUAGUUUAUCAACUGUAAGAAGGGGGCAUUAUGGACUUGUUCACACUGCCGUGAAGCUUAAAAUUCUGCGGGAACUGGUAGAUGAAGCCAUAACAACUUCUGCUGUAAGACAGAAUAUAGAUGAAAAGAUUGACCAGCAACAAGCUAUUGCAGCAUCAAAAAGAGAGCUUGCUAGAAAUAAAAAGGAAGAGCAUAAGCUGGCCAUGGAAGGGGUGACAGAAAAGGAAAUGAGUCAGACAGAUGCUGCAGAAAAUGUCAACGGGAAUGUAAAUGGUCAGGUUGUGGAAAAAGAAGGAAAGGAGAAGAAAAACAUUUAUGCCAACAAGAUGGGAGAGGGGAAAGUACAUCCUAUGUUAGAAUUUCAAUGGUUACUCUCAUUGAGAAGAGGAUGGCACUCGAGAUGGGGCAAUUUUCUGGUUUUCUUCAUUCACUAAACACAAAAGCCAUGUCCUCCCAAAGAGGAUUGGAUACAUAUUUAUAGCUGCUUGUAGCAGCCAUGCAGCCAUGCUAGUCUAAGAGGGUGCUGUCAGCAUCCCAACAAACUGUCCUAGAGCAGAGCAUCCCAACAAACUGUCCUAGAGCAUCUCAACAAACUGCUGUCCUAACUGUCCUAGAGCAUCCAAACUGAAAGUAGAGAUGCUGUCCUAGAAAGCUGAAAAGCAGGAAAAAAAGGCACCACAAGACCAAGACCAACCAGCCAAGACUUAUUCCUACAUUCUCCCCCUAAGUCUUGUGCGCCGUCUUGUGGGAGAGUUGAGCCAUCCCGAUCCGGGAGCAAAGCUCAAGGAACUUGAUCCUCCCAAGGGGUUUGGUGAGCAAAUCCGCAAGCUGGUCCUUGGUGUUGAUGUAGCUCGCCUUGAUGCUCCCUUCCUCCAAGUAGCUUCGGAUGAAAUGGUACCUCACUCGGAUGUGCUUGCUCCGUUCGUGAAAAACGGGGUUUUUUGCCAGGGCCAGAGCGGACUUGCUAUCCACCCUGAGCUCCACCGCUCCAGUAUCUCUGCCGAGGAGAUCACUAAGCAGUCGAGCAAGCCAGAGCGCCUGGGUCGAAGCGGCGGAUGCUGCCAUGUACUCGGCCUCGCAGCUGGACAGGGCCACCACCUGCUGCUUGAUUGACUGCCAGCUAACGAGGCACUCGUCGAGGAAAAAGAGAAUCCCGCUCGUGCUCUUGCUGGUGUCGAUGUCGCCGGCGUGGUCGCUGUCGCUGUACCCGACGAAGUGUGCCUUGCCAGGACACCUCGGGUAGUAGAGACCGUGGUCGAGAGUCCCCGCAACGUAGCGGAUGAUCCUCUUCACAGCCUGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
43.09%
HE_num:
HEP:
56.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.63
Avg Expression:
60.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.34269220332746 | 6.21804886169002e-160 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -1.16707904094873 | 0.0108938468352406 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.91759287346818 | 1.72484855905309e-156 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.998506445199 | 3.12037309800879e-186 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.7851985124861 | 3.02192195127908e-50 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.84750364225918 | 8.35738782915503e-141 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.44574792617075 | 3.58415329465768e-118 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.90177265929459 | 1.4715097780148e-112 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -1.2291049062111 | 4.01838384194837e-05 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.1227031167019 | 2.01466942054701e-14 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.09416331233819 | 3.79469662615107e-06 |
| 12 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.09894803812402 | 0.000836181985790878 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.45202559000393 | 1.70636225445585e-11 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.1564277927801 | 0.000175593725274835 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.79020097530755 | 1.19878000721497e-154 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.73418071881497 | 8.12121267321095e-213 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.36506830067713 | 8.78705952650785e-10 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.64070196766728 | 2.69970591485799e-08 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.11485448494409 | 0.00018867662045952 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.63975831567382 | 2.68610999565897e-08 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.64046025268268 | 2.82637876747368e-08 |
| 22 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.34097788846588 | 0.00641079547563009 |
| 23 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.29482748056165 | 2.70785722932681e-48 |
| 24 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.33072435932625 | 4.28543150111854e-16 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.71833907760559 | 3.56401279245528e-113 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.27793037875854 | 1.58734624181721e-155 |