Chr:
Chr4
Start:
15062671
End:
15072442
Strand:
+
Ref_name:
LOC4335486
Sequence
(XM_015778777.2):
UCACGAGGGAUACCGGAUAUAUGCUUCAAGAUUCCUGGGUUCCUGUACUGUCUAGAGUUUUAUUUAGCCUAACCUUCUUGAGAUCUGAAAGUACUGUGUUUGUCCUCAAAAUAUAUAGGUAGCAUCGAUCACCUACCCAAUUGCAAGAUCUACCGAGAGCUUGCUCGAUCCAUAGCCUGUCUCCAAAUAUUUCUCCCCAUUUUUGCUAGACACACGAAGAGUUGAGUGAUGGAUCCGGUGUCGGUAGCUGCAGUGGGAUGGGCCAUAUCCACCGCAGGGUGGAUCAUCUCCCCCAUCGUCGCCAAGCUCGUGAACAGCGUCUGCCCCCGCAUAACCUUGAACGUGCCGAAGAAGAUCCGCGACCUGGAGACCUGCACUCUCCCUCGGCUGGCGCUCACUCUGGGAGCACUGGAGAUCAGCCAGAGGCAUGAGCUGGAGAAACUGGUGAAGGAGCUCAAGUCGGCUUUCUAUCAGGUGGAAGACAUCCUGGAUGAUGCGGAGUACUGUCGUCUGGAGAAACAACUAGCCCGCUCCAAGAAACGCAAGUUCCCCUUGGAUUUUAAUGAUGUUGGGUCCUCGUACCAGGCUGAUGGUACCAAGUUAACGGCAGGAUAUUCAAGAUGCCGUUUGAAGGAUAAACUAGAUAAGAUAGAGAAACUAAUUGAGAAAGCACAGGACAUUAUUAAGUUAGCUAACCUGCCAGGCAAUAAUAAUGAAAGUGGCGAUCAUAGACGAUACGUUGGUGUCACUGCCAAACAUACAUCGAAGCCCACCGCUGCAUAUCUGCCACGCAAGGUAAUCGGUCGAGACAAGGAUCGUGAGGAAAUAAUAAGUAUGCUUCGUGAUGAAAACCAGUCAAGUGCUGAUAGAUGUUUUUCCGUUAUUGGCAUUCACGGCAUCCCUGGGUCUGGGAAGACAACUCUUGCACAGUAUGUUUGCGAGUACGAGGAGGAAGCCAACCACUUCGACAUUGUGAUGUGGAUUCAUGUCUCCCAGAAUUUUGGCCUGGACACCAUCUUGAGGGAGAUGAUUGAACAGGCUACAAAGCAACCAUGCCCUCAGUUCAAAAGUCUUACUGCUUUACAGAAAAGAUUGAAACAAGACCUGUGCGAAAAGCGUUUCCUGUUGGUACUAGAUGAUGUCGAGCAUAAUAAGGAUAUAAGCGAGGAUGAUCUUUCUGCAUUGGAAGUUGGGGGAGCAGGAAGCAAGAUUCUAGCAACCAGUCGAACUAGAGAUGCUUUAUUGGCUUUGGGUGCUGUGAGAUCGAAAUGCAUUCCAAUAUCUAAGUUAGAUGAGCAUGUCUUCCGAGAAUUGUUCUUGCAAUAUGCACUUGACGGUGCAGAGAUAUGUGAGCGAGAUCGAAUAGUACUGCAGAUGAUUGGGGCUGACAUUGCAAAGAAACUGAAGGGAUCACCUCUGGCAGCAAGAACAGUGGGAGGACAAUUGCGUAUAAGGCAAGAUGUUGAGUUUUGGAGGAGUGUACGAGAUAAGGAUUUUUUCAGUGACGCAAUGGAAGCUCUGCGGUGGAGCUACCAGCUUCUUGAUGAGAAAGUUAGACGAUGCUUUGCUUACUGCAGUAUUUUUCCCAGAGGGCAUCAUUUGGGACGCAGUAAGUUAAUUAACUUGUGGGCAGCAGAAGGGUUCAUAAGCAGAGAGGAAGUUGGAGGAGAUUACUUCCACAAAUUAGUGGCGACCUCGUUUCUGCAGCUCGAACGAAAGGACUCGUCGGGCGAGGAGUACUAUUUACUUCAUGAUCUGCUGCAGGAUUUAGCAGAGACGGUCGGACGUAGUGAUUGCUGCAGAAUUGAGGGUGGCUGCACAGGACAAGUUCCUCGAGACGAUGUUCGCCAUUUGUAUAUUAAGGCUUGUAAUGGAGCAACAGUUGCUGGCAAUAAAGCUUUCGAGAAAAUGAUUACCGAAAAUAUUGUCAAACUGAAGGAGCUGCGCACUCUGAUCAUUGACGGAGGGGAGACAGGAAUUGAGGCAAAGGUGUUCGAUGAUAUCUUCGACAGCUUGAAGUCUCUACGAGUACUGAUUGUAGAGACACAGAGUAGAAGAAUAUUGCAAAUCCCAGAAUCUAUUGGUUACUUAAAGUAUCUACGAUAUCUUUCUAUCGAGUAUAGAUGCCGUAUAUUUUUUCCGCGCACGGUUACAAAGCUUUACCACUUGCGGGUGCUUGAUUUUGGUGAAUAUGGAAUGUUGGAACGUAGUUGCUCCCCUGAAAAUAUGAGUAACCUUGUGAACUUGCAGAGAGUGGUAGGCCGUUCACUUGGGGAUUUUCCAAACAUAGGCAGGCUGACAUUGCUCCGAACAUUACCAACCUUCAGGGUGAAAAGGGACCUCCUGGGUUACGACAUUAAGCAGCUGAAGCACCUAAACAAGCUCCAGGGAAAAUUGGUGAUCAGUGGUCUCCAACAUGUUCGCAGCGAGGAGGAAGCCGUUGAAGCGAAGUUAGCUGAGAAGGAGCACCUCAAACAACUGACACUGGCCUGGGACGAUGAUAACACAAGCAGUAACCACGAUCCAGCAGUACUCGAGUGUCUAUGCCCGCCAAUGGGGCUUCAAGUCCUGGAAAUCAUAGGCUACCGUGGUUCAUACCCUGGCUGGAUGGUGGGUAAGCAUAGUGGUCAACUGUACCUUCAGAAACUUGAGCUCCGCCAAUGCAGCCCACUGGGACCUGCUCCUAGACUUUUUGAGUGCUUCGUUCAUCUGGAAUCGCUCUGUCUCUCUCACUUAAGCUGGCACACCUUGCCAGAUAACAUGGAGCAAGUCAGGACUCUCAAAGUUCUGAUGAUCUCCCACUGCAAGAAUAUGAAGGUGCUGCCAACACUGCCGCAGUCUCUUUCGCGUUUUAAACUCUCAAACUGCGGGCACGAGUUCACAAGGUCUUGCAAACAGAAUGGAGAAAAUUGGGAAAAGAUCCAGCACAUUCUCGAAAAAAUAAUCCUAUGAUAUCCAUAGCUCUCAAGACGAGGCAUCAUGGCGCAAUGGCGUUGCAUCAGCAGGGCUUUAGGCAUCAAUGGGAAGACGAUGAAGGGAAUGUUGAGCAAGGUGGCAGUUCAGACCUUAAGCCAAACUGCAGGCUGGGCCGGAUGUAUGUGUGUUAUGAUUCCUUGGUGUAUUUUCAUUCUGUCCUUUUUUUAUCAAAAACUAGGAAGGUAGCCCGCGCCUUGCGCGGCCAUGUAUUUUAGAUUGCGUUUGAAAAACUUAUAUAGGUGGAAUAUCAACCGGAUGACACCUGCCAUAUUUUUCAAAAGUACUACUUCGAAAAACUUAUAUUGCCAUGUUUGAAAAACUUAUAUUGCGUGGGCAUGUAUUUAGAUUGCAUUUGAAAAGUUUAUAUAGGCGGAAUAUCAACCGGAUGACAACUGCCAUGUUUCAAAUGUACUAUUUCUCCGUAAUUUUUCUUCAUCAACAUUGCUUAGAUAUUUUUUUCAUGCUGUUUGUUAGCUUUUAAAAUAUAUAAUAUUUAAUCCAUCGGUAUAAACAAUUAUGUAUGAUCCGUAUAAACACUUGCCAUGUUUCAAAAGUAUCUAUUUAAUUUGUUUGGAAAACGUGCCUAACAAAAUAAACAUAAAUUAAAAGUUAAAUGUUUUGUCUUGUUUAAUUGAUUGUUUAGUGGUCUUUUUUUAACAAAUCCUAAAAGAACUAUUAUUGUUAGUAAACAUGCUUUAUUUGUACCAUGAAGUUAGUCAUCUUUUUAGUUGGUUCAAUAUGCAUGUUUUACAUACUUACAUAUAAAUUAACAAAAACAUAUCUUAGAACCUCACUUCCUUUUAAUAUGUGUGAUCUAUAGUAUCAUUUCUAAAGCUAAAUAUAGUCGACAUGAGUCAAAAAAUUUAAAUAUAAUAGUAACAAAUAUAACCUACUAUAUACUUAUACCUUAGUGUGGCUUAAUAUGCAGACAAACUCAUUAUAAUAUGGUAUUGGAUAGAUGCAAGACCACUAAUAUUUAAGCAUUUAAUAAUUGUUAUAAAAAUGGAACAUGUAAUGGUUGGAUCAAUUUUAGUGAAAAGUUCAAACUUAUUUGAUUUUCUCCAAAUAGUUCAAUUUAGUCCCUAUUGAUAUUUUAAAUUGUAAAUUUUAUUUUAUGCCAAUUCAAAAUAUAGGGGUUAUGGAUAGAGCAAUAGUUAGAUUAAAAAUCAAAUGUGUAGCUUAAAAAUAUGCAUGUUUUAAUAUUAUUGAUUAUUUCUCGCAAUAAAAAAUGGAUGGGUAGAGGAGAGAGUGGUGAGUUAGAGCUGAGAGGGGAGAGGACGUGUAGUGUUGUCAUUUCAUAAAGUGUGAGCCGUUAAUGUGGUCUUUACCAAAAGUAAAUACUUCCAGAGUAUUCUUUUUUUUGAUGAGAUUCCAUAAAUAAAAUUGCACACGAGAGCUUAAACGUUGUCGCACUGAGUUUCGCUAUAUGAAAAAAAAAGUUCAAUCAAAUAUGGAAAAUAAGCCUAAUGCAAACACUUGGACAAUAUGCUUAGCUUGUGAUAACCGUACAUCAGCGAUAACAAACUGAUUUGAUUAAGUAUGUGUCCUCAUUAGGGUGGUUUUUGGAACAAAACUAAGUAGGGAUGGGUAUUUGCAACAAAAUAACUUAUGGGAUGGAAUGUCAAACUUCAAGUGAUUUAUGAGGUGGUUUUUGCAAUUUUCCCUAUAUAUAACAAGAGUGUGUGAAGAUUUCAUUGGAUUAAUCUCUUAACUUCCUAUAAGUAUUGAAAGUUCGAUAAAUUCAUGUUGAUUCUAGUUUGAGUUUAGGCAUGGGAAGUAUGGGGAAUUCUAGUGUCACAUGCAUUGCGUAAUUAGCUGCAGCUUUCCAAUUCCAGACAUCAUGAACAAUGUAUUUGGGACCUGUUUUCUUUUGACGAAAUGGAAUUAGACAUAUUCAUAGACCAAUGUGUAUAGUCGUAAUGAUGCAUAUGAAUGUAUUCGUGCAUAAUUAGCUAGGCUGGGUCUCAUGUACAGGAUCUGGCUAAGAAUUAAGCAGCUAAUCCAUAACAUGUGAGAAUCAGAUGUUGAUUUCUGGAUAUUAUAGCUGAGUUCUUUCUCCCAGGUUCCCAACUACAUAUCUCGUUUUCCGCGCGCACAUUUUUCAAACUGCUAAACAAUGCGUUUUUUAAAAAAUAAUUUCUAUAUGAAAGUUGCUUUAAAAAAUCAAAUUAAUCUAUUUUUGAAAAAAAUAGAUUGCUAAUACUUAAAUAAUCCCACCUUAAUGGACUGUUCUGUUUUCCGUGCGUGGGACAAGUGUACCGAACCGGAAUUAGCGAACACACCCAUAGGAAGCUUAUGGUGCUUCAGGACAAUAACCUGAUGUUUAUUAACAUCAAGCAAUUCUUCGACUUUGACAAUCCAAGUAUAUGAGAAACUCAGUAUGUCCUUAGAUUACAGAAUGCUAUGUUCUGUUAUAGUUUCUCUUCGAUUUGCUCAGCCAUAGCCUCAUUUCAAUUGUAAAUAGCCUCUAUAUAUUGAAAUUCUAUUUGUUAGAGGGGGUAUGGAGUACAUCAUAAACAGUCUGCAGAACCUGCACGUAUAGUAUAUUAAUAUAUUCUAUAUCAAAAGUCUGGUUCACGGAGUAACAUUCAUCUUUUACACGUUAACAGAAACAGUGUGGAUAUACAAGAUGCGCCCAGCAAAAUUUUACACAUCCACUACAGGGCCAGGGCCGGUCCUGACUUUUCAGGCGCCGGGGCGAAACUAAAGUCAUGCCCCGGUGCGAAACAAAAUAUAGAGGCCCUUAUUAUACGAUAUAAUAAUAAUAAUAAUAGAUACAUAUACUAAAUUAUUAUCAUAAAUAUUUAAAUUGCAUUCAUAAAUUUUAUAUAGGAAACAUUGAACAUGUUACCUCGAAAAUUUCUUCUGACAUUUCUAGCUGUGAAGUCAUUGAUAAUUGUACCAAUAUCAAUUUCAUCCAAUAAUUUCUUCUCAAUGCAUAAAGUUGCCAAACCAUUUAACCAUUUCUCUUUUUUUUCCUUUUCUCGCUACUUCCUCGACGACAUGUCCUGAUAAUUAUAAAAAAAAUAACAUUAUUGUAGUCAUUUAACUCAUAUUACACUGCAAAAUUAUAAAUCUAAGUCGGGAAAAUAGUGCAGCCAUGGCCUUCGUUGAUUCGUCCAACUCUAGGAACAACAUCAACUGAAUUAAUUAAAUAAUUAAUCUAGCAUCCAAUCCUACGGGAACAACUGCAACUAAAUCAAUUUUUCACAUGUACUUAGCGAUGGCAAUUGGGAAUUUGGGAUUUGGGAAAUUGACUCACUCACCUGAACACAAAACAUACCGCUGAGUCCUGAUUCCUGAAUUACUAAUCGUUCUCCUCGGCAGAUGGCAGCAAAGCAAUCCGGUAGGCGGCAAGCGCGGCCUGCGGGCUUGUGUCGGCGGACGGCGAUGGCGCGAUAUCGUGACUCGCACGAGGGGUUAGGGUGUGGGCGGCGCCGCAGCCAUCUCGCUACUCGAUCGCGUCUUCUGAUCUUAUCUCUUUCGGUUCGCUUUCUCUGCACGAGGCCGAGGGGCCGAGGCAACGCCGGCCUACGGUUGGAUUGGUCGGGGAAGGGGGACGGGAGGUGGAGCCCUACGAUCUGGGUGCCCAGGGCAGCCGCACCUCUCGCCCCCCUCCAGGGCCGGCCUUGAUCCACUGUAAUGGACGCAUUCAUCCACUACCAUUUGAAACAAAACUUUCUAGCAAUCUUCUGAGAUAUAUAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.91%
ME_num:
MEP:
16.67%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.85
Avg Expression:
2.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 11.0472326245591 | 1.69236808776142e-14 |
| 2 | 9311 // leaf // control--/--9311 // leaf // salt | 1.50844732160607 | 1.22567201074725e-32 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.19665671671345 | 7.61576444997586e-06 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.48171408011023 | 0.000685807213064343 |
| 5 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.87388586578475 | 8.58302030424571e-21 |