Chr:
Chr3
Start:
20699652
End:
20747440
Strand:
-
Ref_name:
LOC4333287
Sequence
(XM_015775855.2):
AGCCUAGGUCUAGCUGCAUCACACCUUCUCCACCACAAGAAAAAUAGUGAUCUGCUCAUAGUGAUAUAUGUAUGGUACAGAUUGUGACGAUAGAGGAGAAUCCUUUCCUUCUUACAUGGUACAUCUUGUCACACCUGUUGCCGGGCACAUGUUCUCCCUGUUGCAGCACCUACGUGUAGUUUAGCUGCAUCUCUUCUUCCGGUUCUACGUACCCUUAGGCUGUAAAAAAAUGGCCGGCGGCGACCAGCGCGGGGAUUCGCCGUCGUCGCACGAGCUGAGCGGCCGGCUGGAAGGCAUCCUAGCCGACGGUGAGGCGCCGUGGGCUCGUCGGGCUUGCAAGGCGGCCGCGUUGGAGGUCAGGCUGCUCGCGCCCAUCGCGGCGCCGGCCAUCGUGGUGUACGUGCCCAACAACGUGCUCUCCAUCUCGACGCAGAUCUUCUGCGGCCACCUCGGCAACCUCGAGCUCGCUGCUUCGUCGCUCGGCAACAAUGGUAUCCAGAUCUUCGCCUACGGCCUCAUGCUGGGCAUGGGGAGUGCGGUGGAGACGCUGUGCGGGCAAGCGUAUGGCGUGCACAAGUACGACAUGCUCGGCGUCUACAUGCAACGAUCCACCGUGCUGCUGAUGGCCACCGGCGUCCCGCUCGCCGUCAUCUACGCCUUCUCCCGCCCCAUCCUCGUCCUCCUCGGUGAGUCCCCGGAGAUCGCCAGCGCCGCCGCCGUCUUCGUCUACGGCCUCGUCCCUCAGAUCUUCGCCUACGCCGCCAACUUCCCCAUCCAGAAGUUCCUGCAGGCGCAGAGCAUCGUGGCUCCCAGCGCCUACACCUCCGCGGCCACGCUGGUGCUCCACCUGGUGGUGGGUUGGCUGGUGGUGUACCAGCUCGGCAUGGGCCUCCUGGGCGCGUCGCUCGUGCUCAGCCUCAGCUGGUGGGUCAUCGUCGCCGCGCAGUUCGUGUACAUCGCCGCCAGCAAGCGGUGCCGGCGGACGUGGACGGGGUUCUCCUGGAUGGCCUUCUCCGGCCUCCCCGAGUUCCUGAAGCUGUCCACGGCCUCCGCCGUGAUGCUCUGCCUGGAGACCUGGUACUUCCAGAUCCUCAUCCUUCUCGCCGGCCUCCUCGACGACCCUCAGCUCGCCCUCGACUCCCUCACUGUCUGCAUGACGCUUGCUGGAUGGGUGAUGAUGAUAUCCAUCGGGUUCAACGCUGCAGCGAGUGUUCGUGUGGGGAACGAGCUGGGAGCGGGGCACCCGCGGGCGGCGGCGUUCUCGGUGGUGGUGGUGACGGCGGUGUCGUUCGUGAUAACGGUGGUGAUGGCGGUGGUGUUUCUCAUGUUCCGCGACUACAUCAGCUACAUCUUCACGGAGGGGGAGACCGUUGCACGAGCCGUCUCCGACCUCUGCCCCUUCCUCGCCGCCACUCUCAUUCUCAACGGCAUCCAGCCCGUCCUCUCUGGUGUGGCUGUCGGGUGUGGAUGGCAAAAGAUUGUGGCGUACAUCAAUGUCGGGUGCUACUAUUUUGUGGGUAUUCCUCUCGGUUUUCUCCUCGGCUUCAAAUUCCAUCUCGGAGCAAAGGGGAUAUGGACUGGGAUGCUCGGUGGUACCUGCAUGCAGACGUUGAUAUUGUUCUGGAUCACUUUCAGGACAGACUGGAACAAAGAGGUGGAAGAAGCCAAGAAAAGACUGAAUCAAUGGGAGGACAAGAAGCAACCGCUUCUUGCAGGCACGGUUGACUACUGAUUCGCAUGACAAAUGUUGGUUAUCGGCAUGGCUAGAGAACUCCACUGAUCCUAUCGAGGGAGUUAAUAGGAACAAUGAGACAUAUUGAACAAAGGUAGCCAAGGUGUAUAAUCAGACAACGCCUCCUAACAUACAAAGGGAUCCCAGUUGUCUCAAGUCACACUGGCACAAGACAUCAUGGAAGGUUGCCUUGUUCAAUAGAUGCUAUGUUCAGCUCCGAGAUGCACCCGUGCGUGGUAGAAACGAUGAGCAGUUCAUGCAGGAAGCCUUAGCACUCUACACCAGCCGGACGAAUAGGAAACAUUUAAAAUUUAUGCACUGGUGGAAGGUUGUAUGUGAUUCUCCAAGUGGAAUGUACAUGUGGUAAUGAUGCUAGGAAGUUCAGUCCAAAUCAGAACAUUAAUUCUCCACCAGCAGCCCAACCGAGAUCUAUGGGGGUUAAGAGGGCGAAGAAAGCAAAGGGAGCAUCCCAGAAGUGUGGAGAGCAAUUGUGGAUAUAUGUCAAGACCUAAUUGAGUCAAAGAGGAGGUAGAACCUAGUUGAGUCUAAUGCUUCAAAAAAAGAGGUAGAGGUUAUGAAGGAAUAUCAGCAAAAGCUUAUCAACGUGUUAAAGCGGCUAACCUCACCCUCUUAGCUGCACAAGAGAAGCACGAGUGCAAGCUGAUUGACCAGAAGAGCUAGGUCCAUGGAGAUGUUUACCUAACUCUUGCAAGUGGACACAUCUCAGAUGGAGAAAUGGACAGUGCAUAAGAUUUAUAAGCAUAAUGGAAAUUCUGGAAGGGAACAGUGCACAAGAUUCCUAAGCAGAAUGGAAAUUCUGUUUAUGAACCAGUUUCUCCUUCUUAUGUUAACAUGCUUGCUGAUCACAUUUUGAUGAAUAUAUUUUUUUUUGUCUUUCCAGGUGCCGGCACAUAAUCACUUAUUCGUUUUUUGGUAGGCAUUUUGAAGGAUGAUACCUAUCUAUUUGUUGGUGCAACAAUAGCUAAUAUAUAUAAUAUGGGCGGAUUUUUUUGUUGGGAAAGGGGCUGCAGUUGCAGGAUCAGGAUAGUUACUUUUUUUUCAUACAUGUGCAUAUUGGCUAGUGACUAGUUUAGAUGGAAAACAUGUUGUUUGUGGUUGAUGGGGAAACUUUUGGUCAUUACCCUACAGGGAAGGCAUAGCUAGAAUAGAUGAUGUUGAUGUGUUGUUAAUAGUCAGUUGCAAUUUAGAUAUUGCCCAAU
Sequence
(XM_026023868.1):
GGACACAGCCUAGGUCUAGCUGCAUCACACCUUCUCCACCACAAGAAAAAUAGUGAUCUGCUCAUAGUGAUAUAUGUAUGGUACAGAUUGUGACGAUAGAGGAGAAUCCUUUCCUUCUUACAUGGUACAUCUUGUCACACCUGUUGCCGGGCACAUGUUCUCCCUGUUGCAGCACCUACGUGUAGUUUAGCUGCAUCUCUUCUUCCGGUUCUACGUACCCUUAGGCUGUAAAAAAAUGGCCGGCGGCGACCAGCGCGGGGAUUCGCCGUCGUCGCACGAGCUGAGCGGCCGGCUGGAAGGCAUCCUAGCCGACGGUGAGGCGCCGUGGGCUCGUCGGGCUUGCAAGGCGGCCGCGUUGGAGGUCAGGCUGCUCGCGCCCAUCGCGGCGCCGGCCAUCGUGGUGUACGUGCCCAACAACGUGCUCUCCAUCUCGACGCAGAUCUUCUGCGGCCACCUCGGCAACCUCGAGCUCGCUGCUUCGUCGCUCGGCAACAAUGGUAUCCAGAUCUUCGCCUACGGCCUCAUGCUGGGCAUGGGGAGUGCGGUGGAGACGCUGUGCGGGCAAGCGUAUGGCGUGCACAAGUACGACAUGCUCGGCGUCUACAUGCAACGAUCCACCGUGCUGCUGAUGGCCACCGGCGUCCCGCUCGCCGUCAUCUACGCCUUCUCCCGCCCCAUCCUCGUCCUCCUCGGUGAGUCCCCGGAGAUCGCCAGCGCCGCCGCCGUCUUCGUCUACGGCCUCGUCCCUCAGAUCUUCGCCUACGCCGCCAACUUCCCCAUCCAGAAGUUCCUGCAGGCGCAGAGCAUCGUGGCUCCCAGCGCCUACACCUCCGCGGCCACGCUGGUGCUCCACCUGGUGGUGGGUUGGCUGGUGGUGUACCAGCUCGGCAUGGGCCUCCUGGGCGCGUCGCUCGUGCUCAGCCUCAGCUGGUGGGUCAUCGUCGCCGCGCAGUUCGUGUACAUCGCCGCCAGCAAGCGGUGCCGGCGGACGUGGACGGGGUUCUCCUGGAUGGCCUUCUCCGGCCUCCCCGAGUUCCUGAAGCUGUCCACGGCCUCCGCCGUGAUGCUCUGCCUGGAGACCUGGUACUUCCAGAUCCUCAUCCUUCUCGCCGGCCUCCUCGACGACCCUCAGCUCGCCCUCGACUCCCUCACUGUCUGCAUGACGCUUGCUGGAUGGGUGAUGAUGAUAUCCAUCGGGUUCAACGCUGCAGCGAGUGUUCGUGUGGGGAACGAGCUGGGAGCGGGGCACCCGCGGGCGGCGGCGUUCUCGGUGGUGGUGGUGACGGCGGUGUCGUUCGUGAUAACGGUGGUGAUGGCGGUGGUGUUUCUCAUGUUCCGCGACUACAUCAGCUACAUCUUCACGGAGGGGGAGACCGUUGCACGAGCCGUCUCCGACCUCUGCCCCUUCCUCGCCGCCACUCUCAUUCUCAACGGCAUCCAGCCCGUCCUCUCUGGUGUGGCUGUCGGGUGUGGAUGGCAAAAGAUUGUGGCGUACAUCAAUGUCGGGUGCUACUAUUUUGUGGGUAUUCCUCUCGGUUUUCUCCUCGGCUUCAAAUUCCAUCUCGGAGCAAAGGGGAUAUGGACUGGGAUGCUCGGUGGUACCUGCAUGCAGACGUUGAUAUUGUUCUGGAUCACUUUCAGGACAGACUGGAACAAAGAGUCUGUGUGUGUGCAGGUGGAAGAAGCCAAGAAAAGACUGAAUCAAUGGGAGGACAAGAAGCAACCGCUUCUUGCAGGCACGGUUGACUACUGAUUCGCAUGACAAAUGUUGGUUAUCGGCAUGGCUAGAGAACUCCACUGAUCCUAUCGAGGGAGUUAAUAGGAACAAUGAGACAUAUUGAACAAAGGUAGCCAAGGUGUAUAAUCAGACAACGCCUCCUAACAUACAAAGGGAUCCCAGUUGUCUCAAGUCACACUGGCACAAGACAUCAUGGAAGGUUGCCUUGUUCAAUAGAUGCUAUGUUCAGCUCCGAGAUGCACCCGUGCGUGGUAGAAACGAUGAGCAGUUCAUGCAGGAAGCCUUAGCACUCUACACCAGCCGGACGAAUAGGAAACAUUUAAAAUUUAUGCACUGGUGGAAGGUUGUAUGUGAUUCUCCAAGUGGAAUGUACAUGUGGUAAUGAUGCUAGGAAGUUCAGUCCAAAUCAGAACAUUAAUUCUCCACCAGCAGCCCAACCGAGAUCUAUGGGGGUUAAGAGGGCGAAGAAAGCAAAGGGAGCAUCCCAGAAGUGUGGAGAGCAAUUGUGGAUAUAUGUCAAGACCUAAUUGAGUCAAAGAGGAGGUAGAACCUAGUUGAGUCUAAUGCUUCAAAAAAAGAGGUAGAGGUUAUGAAGGAAUAUCAGCAAAAGCUUAUCAACGUGUUAAAGCGGCUAACCUCACCCUCUUAGCUGCACAAGAGAAGCACGAGUGCAAGCUGAUUGACCAGAAGAGCUAGGUCCAUGGAGAUGUUUACCUAACUCUUGCAAGUGGACACAUCUCAGAUGGAGAAAUGGACAGUGCAUAAGAUUUAUAAGCAUAAUGGAAAUUCUGGAAGGGAACAGUGCACAAGAUUCCUAAGCAGAAUGGAAAUUCUGUUUAUGAACCAGUUUCUCCUUCUUAUGUUAACAUGCUUGCUGAUCACAUUUUGAUGAAUAUAUUUUUUUUUGUCUUUCCAGGUGCCGGCACAUAAUCACUUAUUCGUUUUUUGGUAGGCAUUUUGAAGGAUGAUACCUAUCUAUUUGUUGGUGCAACAAUAGCUAAUAUAUAUAAUAUGGGCGGAUUUUUUUGUUGGGAAAGGGGCUGCAGUUGCAGGAUCAGGAUAGUUACUUUUUUUUCAUACAUGUGCAUAUUGGCUAGUGACUAGUUUAGAUGGAAAACAUGUUGUUUGUGGUUGAUGGGGAAACUUUUGGUCAUUACCCUACAGGGAAGGCAUAGCUAGAAUAGAUGAUGUUGAUGUGUUGUUAAUAGUCAGUUGCAAUUUAGAUAUUGCCCAAUGUGAUAUACAUCGGCGUGUCGUUGGCACAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.79%
ME_num:
MEP:
75.2%
HE_num:
HEP:
12.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.78
Avg Expression:
22.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.06494008455532 | 0.00142553058021877 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -8.05135798640027 | 1.14105290328267e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.24516319222394 | 0.00138219350907271 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.41049777795529 | 7.75702808792412e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.99033415814145 | 7.82518614283586e-13 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.71298624898755 | 0.000363428356677577 |
| 7 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.16342747466125 | 0.0379050448263947 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -2.46380372783453 | 1.49580290074613e-07 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.11234388444841 | 0.000296774812597154 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.89078621212717 | 1.54962317927944e-11 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.49315761362138 | 0.00729227295254009 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.23968189759829 | 3.29825843074287e-11 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.20470201978979 | 0.00019075122283564 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.56169636199696 | 6.6625700845574e-17 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.43957446979292 | 1.48889223469875e-11 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.56399549316863 | 1.96776341024431e-05 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.36217704017776 | 7.07207538061393e-07 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.66648938653544 | 3.68521435048826e-05 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.02955901857936 | 1.4858402043542e-06 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -2.75352430316743 | 9.39658852804702e-10 |
| 21 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.61388366902209 | 1.32513905805765e-06 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.39322415673572 | 6.28333775265485e-13 |
| 23 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.61395941656402 | 1.40964035287661e-06 |
| 24 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.61408233192949 | 1.33788839612936e-06 |
| 25 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.59947773247005 | 6.44844606736125e-09 |
| 26 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.09462814787617 | 8.23422134247934e-15 |
| 27 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.85280352834542 | 0.00387334321141474 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.10153926166894 | 0.00191502998729932 |
| 29 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.20538060525146 | 8.7987881599566e-08 |
| 30 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.57414571807541 | 4.67648514165635e-15 |