Chr:
Chr3
Start:
18579709
End:
18623200
Strand:
+
Ref_name:
LOC4333210
Sequence
(XM_015775717.2):
UCUUUCACUCCGCGUCCCCCACCUUUAGAGGUCUGCCAUCCCCCAAUCCUCCCAAGGCCGUGAACCACAAACCGACGAGCACAGCGGGCGCGAGGGCGGCCGGCGCCGGGCGGAGCACACGCCUCUUUCACACCAUCAUCGCCAGCGCCGGAUCCAUCCACGAUGGGCGGCGGCAACGGGCAGAAGUCCAGGAUGGCCCGCGAGCGCAACAUGGAGAAGGCCAAGGGCGCCAAGGGGAGCCAGCUUGAGACCAACAAGAAGGCCAUGAACAUCCAGGCUACAGCUGACGAAAAUUUCCGUCCUGAUUGCUACUGGUGGAGAAGGCACCGAUCUGAUGGUGAUUGUGCUUUCAAUUCUCUUCGCCUGCGCAAAAUCCAAGGUGAUUUUCAGGGGGACUUUUUGGGCAAGACAAUGGUCUUUGCUACUUAAGGAAGAAGAUGGCCAAAAAGUGAGAGAAGGUUGCUUGAUUCUAGAGAAGAGAGUUUCUGGCUUUUUCGCAAUGAAGGGAUGGAACUUAAGGAAAAGAUUGGGAGAUUAAUGCUCUCUGGUUUUCUUGUGUGGUAUGGUUGAAACUUUGUAUUAACUUUUUAAGAAUUUCUGUUGCUAGAGCCUAAGUACUCGGGUCUAGUUGCUUGUGAUGGUGUUAAACCUUGUGUAAGGGUGUGAGUUUAUGUACUCUUGUAAGUUUCGUUGGGGCUGUGUACAUCCUUUUUUGGGUGUAGAGGCCGGUUUAAUCCAUUAUCUAAAAAAAUGUAAAGGAUGCACUAUAUGGCACUCUGAAGUAAGGUUUCCUGAGUAUGGUCUUUUGGUGAACAAAAGAUGGGAGAUGGAUUUUUAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
14.23%
HE_num:
HEP:
85.57%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.80
Avg Expression:
334.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.31518985063401 | 4.93669053059972e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.25582391290731 | 0.000299006293638851 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.07905863531236 | 0.000102559305395254 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.80399512139594 | 7.08078113054755e-19 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.42097840482465 | 1.728523773992e-23 |