Chr:
Chr3
Start:
16919992
End:
16922457
Strand:
-
Ref_name:
LOC4333090
Sequence
(XM_015772707.2):
UGCCACAAAUCUCAAUCUCUCUCUCUCUAGCAAAAGAUUCUACUCCUACUACUAAUACCCUCCAUCUAUAAAUCUAAAUCUAUAAGAAAAGAAAAGAAAAAUAAGGAGAGCUUUUAAAGCUACAGAGAGAAAUACAGAAAGAAAAGUAUACUAUUCCCCUCCGUAUAUAUGAGGAGGAGAAGAUGAUGGGUCACUGCUAGUGCUGCUAGCCUGAGUAGUUUCGUGUGUCUGAGGAUCUCCUGAUCUCCUCCCUCCCUCUCUCUCUCUCCAUCCCCAUCCAUCCUCCUUUUCCUCCUAUUCCCCUGUGGAAUCUCAUCUUCUUCUUCAUUCCACUUCUCUUCUCUCUCGUGGUCGCAUGAUCUCAUCAGGAGCGCAGAUGCUACGGCGUCCUUGAGAAUUGCAGAGAGGCAAAAGAAGAACAAGCAGAGAGCAAGAACAAGCAGAAGCAGAAGCAAAGAGGCGAUGGACGGCGACACGCUGUCGGCGGCGGCGGCGGAGGACGGGAAGGUGCUGCACGCGUUCCAGACGAGCUUCGUGCAGGUGCAGAGCUUGCUGGACCAGAACCGGGUGCUGAUCAACGAGAUCAACCAGAACCACGAGUCCAAGGUCCCCGGCGACCUCUCCCGCAACGUCGGCCUCAUCCGCGAGCUCAACAACAACAUCCGCCGCGUCGUCGACCUCUACGCCGACCUCUCCUCCCUCUUCGCCGCCUCCUCCCCCGGCCCCGCCGCCUCCGAGGGCGCCUCCGUCGGCACCGCCGUCCGCCACGCCGGCCACAAGCGUGUCAGGUCCACCCACCUCGACUGAACAAGAACCAUUCUCAUUUUCUCAAUUAACCACCUCCAAUUCUCCAAUUCCAAUUCCAAUUUCGGCUAGCUUAGCUUAAAGAUCGAGCUCUUGCUUGCUUGUAUAUCUAGCUAUAAUCUAUAAAUCUACAUAUGAGCAAUUAACGCCCCCUCACAACUACUCCCGAUGUUUCAUAUUAUAAGACUUUCUAACAUUUGCCUACAUUCAUAUAUAUGUUAAUGAAUCUAGACAUAUAUGUGUGCCUAGAUUCAUUAACAUCUGUAUGAAUGUGGGUAAUGCUAGAAAGUCUUAUAACCUAAAACGGAGGUAGUACAAUCAUCUUCGGUUCUUUCUUGUAGCUGUUGUUUCAUCUUGUUGUAGCUGAUAUGAUGAGCUAUUAUAUGGAUUUUGAUGCAACAAUGCCAAUACAAGAGAGUGAGCACUUCUCUGAAUUCCCAAAAACAUCAUUUUUUUUUCUUUCCAAUCUGAAGUUCAGUAACAGUGUAUCAGCUUCUGUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
15.65%
HE_num:
HEP:
84.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.65
Avg Expression:
92.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.00791600615933 | 0.00559297964413321 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.80380206209289 | 6.99100714017036e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.54283000983757 | 3.11263048032761e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.02405877082924 | 0.016849451909885 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.16733040583034 | 3.32914437455143e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.96226621073677 | 1.15559305345719e-10 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.05156439610525 | 8.05472004511270e-09 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.04846917896071 | 0.00141732479500926 |