RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS4332713

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

11924452

End:

11929908

Strand:

-

Ref_name:

LOC4332713

Sequence
(XM_015776798.2):

GGCAGACGGCCGCCCUCCCCGCCGCACGGCACACAGCAGCAGCGCCGCCGUCCUCCUCCCGCCUCCUCGCCGGUCGCCUCUCUCAUCUCCGCACUCUCCGAUCUCCCCUAGCGCCCCGGAAGCCUCAUCUCCUCCUCCCGCGCCCUCCCACCUUCGCUAGGCACCUCGGCGAAAACCCUACUAAUCUUCCCGAAUCGACACCGAGCCCCGGUACGACUCCGAUGGCAUCGUUCCCGCCGCCGCCGCCGCCUCCGCACGUUCGUCCCGCGCCCGCUACUCCAUCACUAGCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCCGCCUGGAUCUGCUCCGCCGGCAGCGACGCUCCUGGUGCGGCACCUUCCAGAGGCCAUCCCGCAGGAGAUGCUCUCCCGCCUCUUCUCCCACUACGGCGCCACAUCCGUCCGCCCCUGCGCCGGUGGAAAGUUGAGGAAUUGCGCAUUCGUAGAUUUUAGGGACGAGGUAGUGGCCAGUCAGGCACAGUCUCUGCUGAACAGGUUGAGGUUCCUUGGGAAAGUGCUGAUAGUCGAGAGAGCGAACCAGCCAAAUUCAAAGAAUGCUAACGAGAAGCAACAGGAGCAUGAAGCACAAGGGGCAUUGCAAGUGCCAAGUAUGAAUUCCUUAAACCAGAAGAAUCCCAUAUCUUCUGCUGAACCAAUUGCGCCUAGGCUUGGGGUGGAUUAUCCAUUUCCUCCGCACCUCGAGUACGCGUAUCCUCCACCAGAUGGAAACAUAUUGACAAAUAUAGUCAAUGCUCUAAUUGCUGUUCCCCGAUUUUACACCCAGGUGUUGCAUUUGAUGAAUAAGAUGAAUCUUCCAGCUCCAUUUCGGAUGGCGUUGCCUACUCCACCUCUACCAUCACAAGUGCCUGCUCCACCACCACCACCACCACCUCCACAGCCGUCUGCAGCAAAUAAACCUCAUUUGACAGAUCUGUCUAGUGAUGAGUCUGAGUUGGAAUCUUCUGAUGAGGAUGUUGAUAAAAGGAAAGUUAAGCGCACAAAGCAUGAAGCUAUUGUUGGUCCUGCAGUUGAUAAAAGUAUUGCUCAUGAAGCAGUCGGGGUGAAACCUGCUGCAUUAGUUUCUAGUGAGCUUCAAGUGAUAAAAAAGAAAAAUCCAGUUCUGCAGAUUAAUAUUGCCCCAAAGGCUGCACAGAAGGAGCUUACUGUUCAAAGUACUACUGACAAAGAAUUGGUGCCAACAGCUGAACAACUUCAAGGAAAACAUUUUGUCACACCUCAGGAUAUAGAAAAAGAGAAAUUGCCGCCAGAGGAGAUUUUGUCCCUUCCUAUGUUCAAGAAUUACACACCAGGGAAUCCUGCCAGUGUGUUAUACAUAAAAAACUUGGCAAAGGAUGUCAUUCAGGAUGACUUCUACUAUGUCUUUGGGUCUGUUUUUGAAAACAUGGACAUUGCACGAUCUAGUCUGAGCAUCAAACUAAUGCAGGAGGGGCGGAUGCGGGGCCAAGCUUUUGUGACAUUUCCAUCGGUUGAACUUGCUCAACGCGCACUGAAUCUUGUACAUGGUUUUGUGUUCAAAGGCAAACCAAUGAUUAUACAGUUUGGCAGAAACCCUGCGGCUAACAAAUCUUCCUAGGAGGGUUGCAUUCUUUCAGAUACUGAAUGCACUUUUAAGUCAAUAGGGACUAGCAAAUGGAGACCAAAACUCUUGAGUAUUUCUUCAGACGUUUGGUGGGGAAUGGCACUGAUUGUUUCAGUCUGACGGACAACAAUGUUUUUCGGCCGUGUUGCACCUGUAAGGGUGUGUUUAGUUGGGGAAAAGGAAAUUUUUGGGUGUCACAUCAGACGUUUGACCGGAUGUCGGAAGGGGUUUUCGGACACAAAUGAAAAAACUAAUUUUAGAACUCGCCUGGAAACCGCGAGACGAAUCUUUUGAGACUAAUUAAGCCGUCAUUAGCACAUGUGGGUUACUGUAGCACUUAAUGGCUAAUCACGGACUAAUUAGGCUUAAAAGAUUCGUCUCGCUAUUUCCCCAUAACUGUGCAAUUAGUUUUUCAUUUUAUCUAUAUUUAAUGCUUCGUGUAUGUGUCUAAAGAUUCGAUGUGAUCUUUUUGGGAAAAAUUUUUGGGGAACUAAACGGGCCCUAAAUGGUAAAAUAUGUGGAAGGAACUGGGCGCAUGUACACUGUACAGAAGAGUGAAGAUUGUAGAUUGUGGGCUGAAGAGCAUCCUCGUUCAAUAUGGUGCAAGAUAAACUUGUACAGAACCUUGUAGCGGUUCUGUUCUGCGGUCUGAAAAUGUUGGGUUUGGAAACAAUUGAGGCCUAUGUAAUGUGGCAUUUAUUUACUGAAUUCGGUGGGAACUGAACUGAUUCAUACAUUAAGAGAUUCCUGCGCGAGGUGUGAACUACUCGAAUUUAUUAAGAGUAGCAAUCUAGUCGAAACUCUUGUUUUAUGCUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

0

LEP:

0.0%

ME_num:

459

MEP:

93.29%

HE_num:

32

HEP:

6.5%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.47

Avg Expression:

13.22

Tip: OSA-PHAS4332713 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.061873188487366.42732926178921e-11
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-1.289809156401774.92580944606248e-16
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.67911220138551.76376788292453e-11
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-1.557311584971344.93050277244657e-17
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-2.012742660618161.94022410332024e-20
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.027127903471151.57176151813949e-12
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-2.153644455738352.19792571960211e-35
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.036852562744756.49793741176119e-13
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.223395028047271.42955105686233e-10
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.512000708974561.02650720537634e-24