Chr:
Chr2
Start:
20919158
End:
20921306
Strand:
-
Ref_name:
LOC4329649
Sequence
(XM_015770637.2):
UCUCAUUUGUGCCUUAGCUGUAGAUAUCUCAUUUGUAACUGAGGCAUGCUAAUCUGACUUGAAACUCAAUUCCAACGACCAUUUGUGCACUGCACAACCUUCAAUCAAUGAGCCAUUUAUUUUUUUCAUUGCCUUGUGCCUAACAGCUGAAGCAUUGCAUCCUUUUCCCUUCUUUGUGACACUAGGCAUUGCAAGAUUGUGUCAGUACUCACUUAGUAACUUCAUUCUUGCAUGUGACUAGGUAGGUAUGUAUAUGUUGUUUUUGCACCUUUUGCACACAAAUUUUGACAAUUUGACCCUUUGCAAAAACUAUUUUUACAAAUGAACCGUCGCCAAAACUUAUUUUAAAUCUGACCCUUUUGCUCAACGCCAAAUCGUAUGGCGCUGAACUUAGAUACCUCAGCGGCAAAUAGCAUGGCGCUGAAUGUACGUUGGCACGCUGACUUAUCUCCCAUCCGCCGUGGCACGGCAUUCAGCGCCAGCUGACGUGGCGUUGAGGUGUCUAAGUUCAGCGCCAAAUGAUUUGGCGUUGAGCAAAAGAGUCAGAUUUGAAAUAAGUUUUGGCGACGGUUCAUUUGUAAAAAUAGUUUUUGCAAAGGGUCAGAUUGUUAAAAUUUGUGCCUUUUGCAGGUAUCAGCUGUGCCGACUUCUCCAGAAUCUGCCCUGCGGCCUCCACUUGAUGUCUGCUGCCUUGGGUGGCAAGUACCCUUCUCCUGUUCUACCGGUUAGUUUUCCUUGGCCUUGACACAAUGCCUGUAUUCCACUGUCAUGCCACUCUCCCCUCCUGUCCUGCACUGCACGGUGGUCUGGUUGUGGUUGCUGGUUUGGCUGGUGACUUUAGUUUCUGAUAACUCUGAACUCUGAAGUAGAAGCAAAGACAGACAGGACAAGGACAAGAUAUGCCUACUUCAGUUCGCCAUUGCUGUCCUCUCACAUCGUCGCAUUCUUUCCUUCCCAUCACCUCAGCCUCCUCCUCGCCGGCAUCGGCAUUGUCCUCUUGAUCUUGUCGAUCGAUGGAGAUCGCGGCGGCGGCGAGCCGUGCCGUGGUGGACACCUCCCGGCCGUUCCAGUCGGUCAGGGAGGCCGUCGAGGUGUUCGGCGAAAGGUGCCUCAGCUCCACCAGCCGGGCGAGCAGCGAGUCCGCCGGCGGCGGCGGCGGGAGGCCGUCGCCGCCGGCGGUGCUGGGCUGCCUGAGGAAGCUGGAGGCGGAGCUGGCCGAGGCGAAGGGCGAGCUGGAGCGGCUGCGGCAGAGGCAGUCGCACAUGGAGACGGCCGUGUCCAGCGUCGCCGCGCAGCUCAGCACCGGCCUCGCCAUCCUCUCGGCCGGCGCCGCCCGCGGCAAGGGCAAGGAGCUCGCCGUCGUCGACAUCGACGUCGACCUCGGCGGCGGCGGCGGCAGGGUCCGCAGCGACCGGUGGGACGAGAGCCGCGCCGAGGAGUGGAUGGCGGCGAGCCUGGAGUACCUGCCCAGCCUGUCGGAGGCGCUGGCCAUCAAGAUGGUCGACGACGAUCGCCACCUCGGAGAGAGGAGGCAGGGGAAUGCGAGGAAGAAGAACACCAAGAACGCCAUGAACAGCAAGAAGAAGCAGCAGCAGAAGAAGAAUGGCGUCUCAUUUGUUGGAAGAAUCUUCUCAUCAAGGAAAGAUAAAUCCAGUUCAUAAGCUGCAUGCUGCAGUAGCUGCAAAGAGUGCGAGGACUUCUUUGGGAAAGCAGGAAUUUUGCAUUAAUUAGUUCAAAUGCUAUGAAAUUUCUCUAGAAGUUUGUAUGUUACAAAUGAGCCCUAAAUGUCCCUGUUGGAAUGCAGGAAUUCUGUAGAAAUUUUUCGAAACGGAAACACGGAUUAAACAGUUUAUACUGUGUUCAGUUUCCCAACAAAAUUUCUUCGGAAAUCCCGCGUUCCAAUCGGAAUUGUGAGUUUUGACUCUUUCAUCUAAUUGGAGUGAGCUUUGUGACUCUUUGGUGUGUUCUUUCUAUGAGCAAAGCUCAUGUUUGGUUUCUGAACAAGUUGGUUGGCAGGAGGUAUGCCAAUUUUUAAAGAAAUAUUAUGGUUUUUGUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.36%
ME_num:
MEP:
52.03%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.85
Avg Expression:
8.50
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.34896091691093 | 0.000631060146847191 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.70364199797008 | 5.16008675581646e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.43860971375859 | 0.000152188037168489 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.18584549602223 | 0.00314336462873234 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.10807231681684 | 0.000977069920816081 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.40816553734318 | 3.98686680978176e-17 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.68550490617234 | 9.01164451237802e-06 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.09839976054678 | 0.020563371386404 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.31999506480307 | 1.43944894651281e-06 |