RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS4329048

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

10897174

End:

10901965

Strand:

-

Ref_name:

LOC4329048

Sequence
(XM_015769401.2):

AAACGCAGCAGCAGCAGCAGCAAGCGUUUAGCUAGCUAGCUUUCUUUCCUUCAAUUUCGUUUCCAAAGAGUUGAUCACAGUACGUGUGUUUAGCUAGAGGAAGCUGGUGGUGGCGAGACCAUGGUGGGCAAGGGCAACGAGUGCGCCGCAGCUCGCCGCCGCUUCAGCCUCCGGGCGGCGGCGGCGUCGUCGUCGUCGUCGUCCUUCCUCCCCUGUCUCUUGCUGGCGGCGGCGCUCUCCGCCGGCUGCUGCCGCGCGCACGCGGCGACGGCCCGGGCCCCGCGCAGUCUCUUGGCCCGCUUCCCGACGACGAAGAUGACAUCGGAGUUGGAGAAGGAGGCCGGCCGGUACGUCGACGACAGCUCGCAGGCGGCGAGGACGAACAACAAGAUCACCAACCUGCAGGUGUCGUUCGUCGGCCACGGACAUGAUACUCCAGCAGAUGGAGAAGGGCAAUUCGCUGAUGCUGCAUACCCGGCGAAGUGGAAACCAGAUCAGGAUCCGUCCACGCCAUCGCUGGUCGUUGCUCAUCAUCUACCGAAUGGCAAUGCUCCCUUCAUUGAUGCUGCUUACCCAGUCAAGUGGAGUCCACGUGCUGAUGGGCCUCCUAAACAACCAGCCACCUUCCCUGCUUCUCCAAAUGGUGAGAAGGCCGAAUUCACUGAUUCUGCUUACUCGGUAAAAUGGAGUCCACGUAGUGUUGCACCUCCUAAAGCACCGGGCAUCUUUGCUCAACAUUCUAAUGGUAACAAGGCCCAAUUCACUGAUGCUGCUUACCCAGUCGACUGGAAUCCACGUAGUGUUGCGCCUCCUACUCCACCGGCUGCCUUGUCUUCUCUGGCUCAUCCAGCUGCAGGCAUACAUAUCCAGCGCGGGAUGCUCUUCUUAAUGAAGAAGUUGCAUCCUGGCGCCGUCUUGCCGGAAGGCACGAAGCUGGCGCUGCCGCACGGCGACCACGGCGUGGCCGCGGCGGCGCCAAGGUUCAUCUACAAGGACAAGGGCGACGCCGUGCCGUUCGACCUCCGCGCCAUGGACGCCAUCCUCGCCAUGUUCGGCAUCCUCCCUGGAUCCGACAAGGCGGCGCAGGUCGCCGACACCCUCCGCGCCUGCAGCGAGCUGACGGCCGCCGGCGGCGGCGGCGAGGAGCCACGCGCCUGCUGCGCCACCUCCCGCGAGGCGGUGCUCGACUUCGCCGCCUCGGCGCUGGGCACCAGCGCGCCGCGCGCGGUCACCACGCUCGUGCACGGGAGGGAGCCCCGCAGGUACGUGGUAGCGGCCGACGGCGUCGCCCGGAUCGGCGGCGACGCCGUGGUGGCGUGCCACCCUAUGCCAUAUCUAUACGAGGUGUACUACUGCCACCGGCCAGCCGACGCGGUGGCGCUGAGGGUCGACCUCCACGCCGUCGCCGACGUGGGCCUGGGCGGCGCCACUGCCGUCGCCGUGUGCCACGUCAACACCACCACCUGGGACAGUGCGUACUUCGAGCUCCUCAAGGCAAGCCGUGGCGACGCCAUCUGCCACUACAUGCCGCAGGGCUAUGUUCUGUGGCUAGCCAAUUGAGAGUAUUUCCUACAAACACCUGAUCGUAGCUACUCUACCUUUCAUGAUUGAUGCUUGAUGCAUCUCUCGCUGCUAUCUUAAUAAAAUAAAACUGAUGGUGUGCUCUCUUCUCGUCCUCGACUCCUUUUUUUCUUUUUCUUUUUUUUUUCGAAGAACAGUGAAGGAAGCUAUUCUAAUUACUGUUGCAAUCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

408

LEP:

82.93%

ME_num:

27

MEP:

5.49%

HE_num:

56

HEP:

11.38%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.90

Avg Expression:

126.41

Tip: OSA-PHAS4329048 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-8.578290194131815.75980059096824e-08
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h-10.168944836562.0098958017256e-12
3BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs-1.168466233394560.00483539767209988
4Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-6.163284081723140.0432856269114786