Chr:
Chr2
Start:
6771313
End:
6778375
Strand:
+
Ref_name:
LOC4328756
Sequence
(XM_015767060.2):
GCACUUCACAGGUUUCACCAACUCGUUCUCAUCUCUUUGCGCUGUCCUCCGGCAAAAAAGGCAUUUCUUCCUCCUGUUGUCGGCGCAGCGCCGCCACACGGGUGCUGUGACGGGACGCCGGCGGCGAGGGGCUUGCGGGGUGGUGCGGCGGCCGGCAGCGGCGAGGUGCUCUGGUUGUCAAGCGCCGGGAAGAUCCAUCAGUCAGGCAAAGGAAAGGUGCUUACAUAGGUGAUAUAAACAGAAAAGUGUACAUGGCACAACAAGAGCACAACAUGGUCACAAAAGGCACUGAAAGACUGGUUGCUGGCGCACAACUAUUUGGCCAUUCUACAAGGCAACCAUUCUACAUGAUUCAACCUUCGGAAGAAGUUGUUCAGAAGGAGAAAUUCUAUUAUCACUGCCUACUGAUCACAUCUGAUGUCAGUAACCUGGACCUGAGAAAAGUGAAAGUUGAAGUAAGCAAGUUUUGGAAGCUGACUGACUGGGAGAUAAGGACAGAAGGCAGACAUAAUUUCCUAGUGUCCUUGAACUCAGAGGAUGACCUAGUAAGCUGUUUAAAGAUUCCAAGAAUAGAAACAUCAAUAGAUGAUAAGGAGGUGAACUUUACUGUAGCAAGAUGGAAGGAAGAUGAUGAUGAAAACAUUGAAUUGAUUAGAGAAUGGAUUUUAGUUUAUGGGGUCCCAAGGAUAUACAGAAACUGGAAGGAGCUAUAUCAAAUUGCAUCAGCAGUCGGGGUAUUGAUUGAUGUGGAUGAGGAAAGUUUGGAAGGUGACCAUAAGGAGCCUAUUAAGUUAAAGGUUGCAUUGAGAGGUGUCGAUGCUUCUCCUUUCUCAUGUCACUUUGUGUUCGGGUGGUAUUCAAGAUGUGUUACAUUCACAAUAGAAGACAAAGCACAAACCACAGAAUGUGAAAGGGAGGUCUUGGAAGAUUGCAAUGGUGAAGAUCAUCCUGAUGAAUUUGGCAAGGAAUACAACAACAAGACAGACAAACUUAUUGAAAUGCCUCCAGAAAUACUGAAUAAAGGGAUGAAUUUGGAGAGCAGUAGUCAUGACACUAGUAUUGUUGUUUCAACUCACAACCAUACAUUGGAUGUCAAAGGCUGCUCAGACAAGGAAUUAGAGGCAAUAGAAUCAGCUGUAUUAGUGGAAGAGCCAAGCUCCAUUGAGGAUAACAACAUAAGUGCUCCAGUACCCACUACAACCAUCAUCUCUGAAAAGACAGCAGAAGACAGUCCCCGGGCUGGAAGGGAGCAGUCCAUAAGUGGAAGUUCAACUAGCAUGAUUGGAGACACGCUCUUCAAAGCCACUGUGAUCCACUCCAAGAAAACAACUGAAGACAUACCAAAAGCUGAAGGGGGGCAAUCCACAAGUGGAAAUUCAACAAGCAUAAUUGGAGAAGAACCCUUCAGAGGUAUACAAAAACCACCUGUCAAGAUUGUGUAUGCAAGAAGAAAUAAAAGAUCCAUGGAGAAGCAGGAUUACAAAAGCUUCCUAGAAAAACAACAUCAGAAGGAAAUGGAAGCAGCUAUAGUGGGCCAAAGGCAGAAGUCGGAUGAUGAGUCUGGAGGAGAUGGAAACAAUAAAGACAGCAAUUCGAUUGCUCCAUCUGCCAUUGCAAUCAACUCUAAGAAGAAGCAAACAACAAAAGACAUUGUGACAACUCAAGGAGCACAAUUUAUCAGUGAGAGUUUAAUUGGAGAAACUCAGACAAAAGGAACCGGAGGAGCUCAGUUUAAUGCAAAUCAACACAUUUCUAAAAUGAGCAAACAGGAACACAAUGAAAUCUUUAAGAGUUUCAAUGAGAUGGGUCUCCAAGAAAGCCUACUGAAGGGAAUAUAUGCAUACGAUCUGGAUAAGCCUUCUGCAGUCCAUCAAAGAGGAAUUGUCCCACUAUGCAAUGGUCUGGACAUUAUCCAGCAGUCACUGUUUGGAACAACUGUGACCUUGUGCUGUGGUAUUCUGCAACGACUAGAUUAUGCAUCUACAGAAUGCCAGGCUUUGGUUCUUGUACCAACACAUGACUUAGCACAUGAGACUCAAAAUGUUAUUGGAGUACUUGGUCAAUUCCUAAGUGCUAAAGCUCAUGCUUUUUGUGGAGGGACUAGUGCCCAUGAGGACCAGCAAAUUCUGUCUACUGGAGUUCAGGUUGCUGUUGGCACCCCUUGUCACGUUCUUGGCAUGCUGCAAGGUAGAGCACUCUGUCCAGAUCACAUUAGAAUGUUUGUCUUGGAUGAAGCGGAUGAAGUACUGAGAGGUUUCAAGGACCAGAUCCAUGGUAUUAUCCAGUUUCUUCCAACCAAAACCCAGUUUGGGUUCUUCUCUGCUAGUAUGUCCCAUGAAGCUCUUGAGAUGUGCCGCAAGUACAUGAAUAAGCCUGUGGAAAUCAUUGUGCCAAGAGAUGAAGAACUUGAGGGUAUCAAUGUCAAGCAGUUCUAUGUUAACGUUGAGAAGGAAGACUGUAAGCUGGACAAAUUGUGUGGUCUUUUCGACACAAUGGAAAUCACACGGAGCAUCAUUUUUGUCAACACUCGGCAUCAUGCCAAGUCAUUGACAGAAAAGAUUAGAGGCAAGGGGUACACUGUCUCAGCAAUUCAUGGAGGCAUACACCAAAGAGCCAGAGACAAAGCUGUUCAGGAGUUCCAGUCUGGAUCAUCCCGUAUCCUCAUCACCACUGAUCUCCGUGGCAUCGAUGUUCUGCGUGCCCCUGCUGCCAUCUUCUACGAUCUGCCGACGCAACCAGUCUGCUACCUCCGUCAUGUUCAAAGUGGGCAGCAUGGACGGAAGGGUGUGGCCAUCAGCUUCAUAACUAGCACCGAUGAGCGUGUGUUCUCUACCAUCCAGAAGUUCUGCAACACCCAAAUAGAGGAGCUACCCUCCAACGUUGCAGAUCUCCUUUGAGAAGCGUUUACCCAAUAGUCUUAUCUCUAUUGUCUGCAUAUGUUCCUAGUUGUGUUGAUCAAUUAGAUUUGCAAUUUUGCCUUAGGGACACUUUUCAUGAAUAGAAAUCUUGGUUGGAAUUGUAUGGAAUUUGAACUUCGAUUUACCAGCUGUUUAUCAUCGCUCUAUUAUAUAUUGGCUGGACGUGCGGAUUCAGUUGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.85%
ME_num:
MEP:
71.14%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.74
Avg Expression:
9.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.57839798520615 | 1.02026156075902e-35 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.95011054741488 | 1.45260438194056e-07 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.75622806948472 | 2.50651724642625e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.00669518082449 | 1.16498773786382e-10 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.09532146274324 | 0.00972679491255076 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.00440731167573 | 0.00187202878834619 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.772432064566 | 0.000134432732678531 |