Chr:
Chr2
Start:
4350810
End:
4352038
Strand:
+
Ref_name:
LOC4328495
Sequence
(XM_015767727.2):
GCCAUUUCUCCAUUCUCUCCAUGGACGCACAUAUAUAAGCAGCAACCAUGGUGUCCAUGGCUACCUCUGCCAACCUAGCUUAGCUAGAGCCUAGAGGAGUCAUCUCCAUUUCUUAGCUUCUCUCCUCACCAGAAGCCACCAUGAGAGGCCCUAGCACCACCACCAUGGCCACCUUCAAGCAAAGCUUCCUCAAGAACCUCCUCUCGAGCCUCAAAAGCUCCAGCAAAAACAAGGCCGCCAUGUCGACCCUGAGUGAGAGGAAGCGUGCCAUCAAGUCCUCCGCCGACAUCGCCAUGGCCACCGCCCGCACCGGCAUCGCCGGAGCAGCACGGUGGCCACAUGCCAUCUUGGCAUCAUCAUCAUCGUCUUCUUCAUCUUCAUCUUCAUCUUCAUCGUCAUCGUCGAUGCCGAGAACUACAUUUCCAUGCAAGAUGAUGCAAGGGAAGGUGAGGAGGAGGUGCAAGAGCAUCGUGAGGAGGAGGACGCCAUUGAUGAGUAGUAGUAGUGAGGUUGCGAGGAGACUGGUGAAGAAGAGGGACAAGGUGCUGAGGAGGAUGAUACCCGGAGGCGAGCUCAUCGCCGACGAGAUCUCGCUGCUGCACGAGGCCAUGGAUUACGUCGUUCAUCUGCACGCCCAGGUCGACGUGCUCCGCCGCGUCUCGAGAGCCGCCGUGGCGCGGAGAUCCAGUGCGUCUUCUUCUUCUUCAGGUGGGCUUGCACAAUUGAAGGAACGGACGGUUCAGAUCUCUGGUGAAACGGAGAACCCAUGCUAGAUAGUAGGAUGUGAUUCUGAAAAGAGGAGCAAGAUGUGUUGCAGAUAUUGGAGAAAUAUCCAAGAGGGUGAUCAGAUUUAUGUCCCUGAUCACACUUGAUAAGCAAGUGCAGAAGUGCCCGGAGAAAUAGAAGUGGAAGAGUGGUGGAGAGUAAUCAAGAUUCGUACUGUUCAAAGAUGAAUGAGAGGAAAUUUGUAAGUUGGUGGUACUAAUUGUAGUAGCCACUUUUGUACCAGAAGUAAAAGUGAAAUUGAUUAAUUAUAAUGCAGAGAGAUAGUACUGAAAUUACUGCCCUUGUAUACCUGAAAGUCUGAAAUUAUGUUCUAAGCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
35.98%
ME_num:
MEP:
41.46%
HE_num:
HEP:
22.36%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.75
Avg Expression:
47.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.18740887818806 | 5.39416858718069e-17 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.16394179439715 | 1.76340016762746e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.14611325262514 | 8.60904117162574e-116 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.89584649903122 | 3.26057249376005e-38 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.75498428247007 | 3.17109205772723e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.09942249114816 | 3.53282852386961e-05 |
| 7 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.67085405700848 | 0.00924131871099738 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.15790801450716 | 4.22299412125511e-22 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.61974521172651 | 2.32238721704968e-27 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.2186096795317 | 0.048587663679135 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.20525740482693 | 1.28297862664124e-16 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.73736290925512 | 0.0193577371908702 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.30742447153837 | 1.0509423032292e-29 |