RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS4327230

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

40541058

End:

40554754

Strand:

-

Ref_name:

LOC4327230

Sequence
(XM_026022439.1):

CCGGAAGCUGGCAGCCCACCCACAUCGAGGUCUCCCAUCUCCCCUCUCUCGCCUCGCGUUCACACAUCCCCCCUUCUCCUUCUUCCCCCCCUCUCCCAAGCCGCGAAAUCCCCUACUAAACCCUAGGAUUUUCUCCCCUCCCAAUGCUGGAGACGGAGCCGUAGCAAGGUUUCUUACCUCUGGAAUUUGGGGGAUUCUCAACGCCCAAGCUAGAUUACAUAACAUGAAUGCAGGAUUCAGCCCACAGAUCUUGGCGCAGAAGCUUUUGAAGCUCAAUAAUUCACGACAAAGUAUAGAGACUUUGUCACAUUGGUGUGUCUUUCAUUAUCGACACUGCCGACAAGUUGUUGAAACAUGGGAAUCUGAUUUUCACUCAGCUCCUCGUGAGAGGAGGGUAUCUUUGCUGUACCUUGCAAAUGAUAUCGUGCAGAACAGCAAAAAGGACUCUGGUAGAUAUGUAAAUGAGUUCUGGAGGGUUAUCCCUGCUGCCUUAAACGAUGUGUUUGUCAACGGCGAUGAUUUUGGAAGGAAUGUCGUACAGAGACUGGUUGACAUAUGGGAAGAACGUAACAUAUUUGGAUCCCAUGGGCAAAGUCUCAAGGAAGACUAUUCUAGAAGGUUCAAGGAGUUCAAAUCCAAGUCGAGAAAUUCUAGUGGGGAGCUGCUGGAAAAGGUUAUCUCUUGCUACAAGCAUAUGUUGAAUGCUCAUGUAGACGACGAUACUCUCAUGCGGAAAUGUCAAAAUGCUCUUAGCUUUGUUGACAAUCUCAGCAACGAAUAUGAGAACAACUCUAUUUUAGACUGUAGUAAUGGAUCUGGCUUUGUGGAGGAGCUGCAAGAACAACAUAACAUCCUGAGAGACUCCAUUGAACAAUUCAAAACAUCAGAAUUACUCAGAGGCAAUCUUAUUUCUUGCUUAAAGGAAGCACUCCAUGAACAGGAGUUCAAAAUGGAACGGGCCAGAAGCCAGAUUAAGGAAGUUCAAUCCCGAUACAAGAAAGCUGAUGACCUCUGCCAGAAGCUUGGAAUACAUGUAGAAAGGCAGGAACAACCGAACCAUGGGCCUAAGAACUCAGGUUCUGAAAUGCAUGGUAGCUUUGGCCCAGAUUCAGCUAAUGCCAGUUCUUUUGAGAAGGGACAAUCAAGUGCGGUGAUGUAUUCCCAGGAGAACGGCGGUGAGCAUGAGAUCCCCAAUGGCGUUUUCUCUUCACGGGCCACCAAGGAUAACAUUGAGCAGAAACUAGAAGAGCACUCUACGAAUAAGAGACAGAAACUACAGAAUGAUGUGUAUGUUUCACGGCCUCAAUCGCCACCUCCGCCACUGCCAUCUGAUGCAUUUGAACAGCCGCCGCCACCACCUGAGCAUCCCCCGCCACCAGAGUCUACAUCGCCCCCUCCACCGCCAACUUCUGAUCCACCUCCAGUCCCCCCGCCACCACCGACAACAGGUUCAUUCAUGCCAAUUCCUUCUGCUCCGUUUGCGGGACUGCCAGUACCUGCCGGCCCUAUGACAGCAGUACCCUACAACUCUUACCCAGUAUUUCCUCCUAUGAACUAUCCCAUGGUCAACAUCCCACCUCCCUUCCCUAGUGCUCCAAAUACCCCCCCUGGUUUCCAAGGUUUGGCUGGUCCCUUCUAUGGCCCUCCUUACCCCGCACCACCACCGCCACCGCCACCACCGAUGAACAGGAAAUAGACUAGUUUCUUGCCUGCAGAUUAGUACUGCCAGCCAGCUUUGGAGGAUAGCCAUAGACUUUGCUUCACUGAAGAAUAUGAUCGUGAUGAUUCAUCGCCAUGUGUUGUGGAGCUUGGAAUAUACUGUUCCUAGUGUUGUACAUUAGUCAGCUGGCCAGAUAGUAGCGGAUUUAACAGUUAAUUAGCAUUAGUUGUUCAGGUCAUGGUCAUGAAGCAAAAAGGAAACCAUGUGUGACUGCUAGAAAGAAAUUCUGGAGUUAUGAGUUAUGACAGCUGAAGGCAAAUGCCAUAGCAUGACAUCUUUUGUUACUCUUCUUUUUCUUCCUUAGAAAAUGUUUGUCACAUUUUGCUUGUGUUGUUUACUAGAUUAUUAUGUCCAUAGUUGUUGCAAUGUUGAGAGCAGGUAAUUCUGUUGUUUUGGUAUGAGAUGCAAAUUUUAAUCCUCUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

0

LEP:

0.0%

ME_num:

155

MEP:

31.5%

HE_num:

336

HEP:

68.29%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.54

Avg Expression:

40.01

Tip: OSA-PHAS4327230 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.026881885051311.74855879652997e-16
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.228774322640341.28880229746992e-24