Chr:
Chr1
Start:
30908413
End:
30921493
Strand:
+
Ref_name:
LOC4327205
Sequence
(XM_015790984.2):
AUAAUUUCUGGUAUCAAUACAAUAAUAAGAGGGAAGAAAAAGGCUAUAUGCUAUCAAUAUUAAACAGUCUUGCUGAAUAUUUCCAUCUAAUGAAUGAUAUAAUGCCAACAUCAGAAAAUAAUGAAGUAAUACCACAAAAACCCAUAUAUGUUGUUUUUGACGGAAAGCUUCCUGGAGUGUACAUAUCUUUUGAAGAGAUAGUAGCCCAAAAAAUAGAUGCAAAAUUAAUGGGUGGAUUGUCAUGGAAAAAAUAUAUAGAUUUUGAUGAAGCUUUAACUCAGGCCAGAAAAAUAUUAGGAAUAAACUACUACUUGGAACCAGCAGCAAAAGAAUAUAUACAAAAAUGCAAAAAAGCCAAAAAUAAGAAAGCUCCAGAGAACCCAUAUUGUUCAAAUAUUAAGAAUGAAGGAUCAUCCCAAAAACCUACGUAUAAGGAAUGCUUGACUAAGGGAGUAGAUCCUUUGGAUGGCGAAUAUAUCGAUUGGAAAAUAAUUGAAAAAUUUGAAGAAGCAUCCCCCAAAUUAAAAAAGAAUUGAAAGAAGAAAUACUUAAAGAAUUAAAGAAAGAAAUGAAUGACAAAUUUGAAGAAAUGAAAAAAGCAUAUGAUGAAAAAUUUGAAGUCUCCUUUUCUGAUGUAGAUACUAUGGAUUUAGGUGGUCAUGGGCAGCCUGACCAAUAAAGCAAUAUAAUAUAAAUUGAUAAUAAAUAUCCAUUCUUUGGGCGAAUGACCAAAGUAUGAAUUGAAUUUGAAUCAAUCCAAAAUGCAAGGACAGUGAAUGACAUUUGACUGUUAAAAAUACUGUGGAGAAUAUUGCUUUCGGCGGAAAAGAAAGGCGCAGGUACAGAGGUGUCUCCACCUUGGCCAAUUCAAGGACAAAGUAAAGCCAAAAAGAAGAUAAGCAUCUCCAUGGUGCGAGCCAGCUCGUGAAAAUACAGUAUCUAGAAGAUAAGCUUGAAGCAUAGUCGAGCCUCCCGAGCUCCUAUAAAAGGAGGGGUUUGCUCAGCUGAGAAGAACAACGAAGACACCAUUCAGAGCAAAGCUUUCAAGCGCGCUCUCACCCUCCAUUCCACCAUUCUUAGUAGUAGUGACUUUAGCCUACCUUGCAUAGUAUAUUGAAGCAAGGAGUUGUGUUAUAACGCUGUGUAAGGCUCAAGUCAAAAUACAGUAACAUGGCUAUCUUCGUGCUAGAGAUCAAGACUCCAUUAUAAAAACUUCCUAGGGCAAGUACACAAGAUUAAGGGGUUGUUUGGUUGAUGUCUAAGCUUGUCAUAACUAAGCUUAGGCAAGUUGUGGCAUGUGGCAAAAGUAUGGCUAAGAAAUAGUUAGCCACAAGUGUGGCAAUAUUAGCUCUAAUUAUCUGAGUAUGAUAUGUAGUACCUAAGGGUAGGAAAGUGUGGCAUGACAUAACUGUGGCAUUGAAACAAACACACGACUAAAAACUGUGGCAUGACUGAAGUGUGACGUGGUAAAGUGAAGCAAUCAACCAAACACCUCCUAAUUUCAAAAAGAAGAAGAAGAAGAAGAUGAAUUCAGCCUACUUACUUUGAGUGGGUGUUGAUAUGAACUGAGCUUAUUAAAUGAUGAAAAUGAAACGAGCAGAGAGUUGAUCAAUCCGUGUCGAGUCAAUAUCGGCCAUGCUGUGAUACAGUGGUAGCAUCUGCAGCCAGCUACGAGAUGAUUGCACCGAUUGUUUCCUCUGGCCUCGAGCCAAGGAUGUAAUUACAGUACGUAAUUGGUGCUAUUCAGGCCAGUUUUUUUAAGCUUAGAUUAAGUUGCGCGGCGGGCCAGGGAGCGGCCGUAGAGUAUUUGUUUUAGUAAUUUAGGGUUUAGCUAGGCAUGCACGAGCCAACGUGGAGAAGAUAUCGUUCAUGUGCAAAACGGCAAAUCUCUUCCCUUCCUACGUACUACUACUACUAGCGUCGUCCAAAAUUUGCCGACCGAAUCCAAACUCCCAUCUGCGCAGGCGCAGCGACCCAAACCGGGCCGCACGCGGCUACACCACCACUACAUAUAACACGCGCGAGGGGAGCAGCAGCAGCAACGGCCGCGAUAACACCUGCGACAAACCGGGCCGGGGUGAUCGAGCGCAGCUAGCGCGCGGCGCCAUGGACCCCUGCGCGUUCGUCCGCCUCACCGUGGACCAGCUCCUCCUCAAGCUGCCCUCCGUGCCGCGCCCGAGCUCCGGCGCCGCCGGCGUCCACCCUUCCACCUCCCCAUGCUUCUGCACGCUCCACCUCCAGGACCACCCCUCCGCCGGCUCCCACUCCCGCACCGCGCAGCUGCCGCUCGCGUCAUCCGAGUCCCCGGGCCCCGUCGCCGCCGGGGAGCCCGUGGUGAUAAGCCUCGACGCCGCCGCGGUGCAGAGGCUCUCGGCGCGCCCCGCCGCCGAGCUCGUCGUGUCCGUGCACGCCGGGCAGAAGGGGAACGCCGGCUGCGGCAUGAGCGCCGGCCGCGCGCUGGGCAGGGUGCGGGUGCCCGUCGACGUGGCGCGCGCCGCGGCCGGGGAGACCGUCGUCGCGCGCGACGGGUGGGUGGACGUGGGCAAGCCGGCCGCGGCGGCGGCGUCCCACGGCCACGCGCGCGCGCAGAUCCACAUGGUCGUGCGGGCCGAGCCCGACCCACGGUACGUCUUCCAGUUCGGCGGCGAGCCGGAGUGCGGGCCGGUCGUCUACCAGGUGCCCGGGGGCGCCGCCGGCGGUGGCCAGCGGCAGCCGGUGUUCACCUGCCGGUUCAGCGCUGGGCGGAGGGCAACCAGGACCAGAUCGUUGACGUCGGAGUCGUCCAUGACUCGGAGCACCAGCAGGAAGCUGCGGUCUUGGCUGAGCACGCUGCACGGCGACCGCGACGCGCAGGCGCGGCGCGAGCAGCGCAAGGGGUGGACGGUGACGAUCCACGACCUGUCGGGCUCCCCGGUGGCCAUGGCGUCCAUGGUGACCCCGUUCGUGCCGUCGCCGGCGGGCUCGGGGCGCGUCUCGCGCGCCAACCCUGGCGCCUGGCUCAUCCUGCAGCCCACCGGCGCCGGGCCGGCGAGCUGGAAGCCGUGGGCGCGGCUGGAGGCGUGGCGGGAGCGCGGCCCCGUCGACGCGCUCGGCUACCGGCUCGAGCUGGUGUUCGACUCGGGCCCCACCGAGUGCGCCGUCCCCAUCGCCGAGUCGUCCAUCAGCACCAAGCGCGGCGGCCAGUUCGUCAUCGACCCGGCCACGUUCCCCGUGGGCGCCGCCGGCGCCGCGUGGCCGUUCGCCGGCGGCUUCGUGAUGGGCUCCACGGCGGAGGGCGAGGGGAGGGCCAGCCGGCCCACCGUGCAGGUCGGCGUGCAGCACGCCACGUGCAUGGGCGACGUGGCGCUGUUCGUCGCGCUCGCCGCCGCCGUCGACCUCUGCAUGGACGCCUGCAAGCUCUUCUCGCAGAGGCUCAGGAAGGAGCUGUGCCAUGAUCAAGAGGACUAGCAGGGAGACGAAACGGAAUCAAGUGCAUGUACUUGGGGGUUUGGCUUGUGAAGUUGUGAUGCAUGCGAUCACUUUCAUGAUUGUGAUUAAAUUAGUUAACUAUAGAUAUUCAAUUGUUUCUUGUGAAAGUGAUGGCCUGUGGCUGUUUUUAGUUUAGGCUGGGUCGGAUCACAAGAAGAGAAACGUAUGCUCUAUAUUCUUUCCUCGCGAUAUUCUUUUGAUUCUUUUUAAUUUAUAUACGUUUCUGUUCCUCUUUUUUCCUUCUGAAAGUCUGGAAAUAAACUCGGCUGCCCGAUGCAAAUCUGCCCUUUGGUGUCUCUGUAGACUGUAGCCUGUAGGUGCCUCUGAUGAGUUGAUGUACACUACACAAAUUGUCUUUUCAGUCAACAGGUUAAUUAUACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.02%
ME_num:
MEP:
85.77%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.73
Avg Expression:
6.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.66218908853093 | 2.11633110041734e-17 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.508872604306 | 1.89303800280696e-17 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.77270489533501 | 5.18057289286348e-45 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.12599596801264 | 4.93264934891432e-20 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.67983869713917 | 2.72380087908216e-42 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 6.15785528821801 | 2.08962456509072e-35 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.80819701390585 | 0.0357360764674658 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.49471956311969 | 1.79136196997948e-17 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.06714111235815 | 0.0416375271739673 |
| 10 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -3.16753281637222 | 1.56824986596883e-10 |
| 11 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.24460673717251 | 0.0425575580712402 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.03991604881611 | 9.93389425134261e-09 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.70285992145412 | 0.000129121633309702 |
| 14 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.15550908437017 | 0.000599436303938543 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.97389311477447 | 9.72146589683392e-08 |
| 16 | 9311 // leaf // control--/--9311 // leaf // salt | -1.8042484052221 | 0.00160022525242166 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.51880385913477 | 5.67151130918406e-42 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.69395999690579 | 3.69184117954295e-31 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.5575279762852 | 9.3830193977724e-07 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.00226338426107 | 0.0418844855292534 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.0893419873018 | 0.00140893140702639 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.21276791517864 | 9.75050403073934e-24 |
| 23 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.30613363130557 | 0.00880962594472874 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.42742771428723 | 1.25574467300581e-28 |