Chr:
Chr1
Start:
13786362
End:
13789926
Strand:
+
Ref_name:
LOC4326495
Sequence
(XM_015780228.2):
UUAGCACUAGGAGCAUCGAUGAAUUGAGAAACUUCUCUAGCUUUGUCACCCAAGCGCUCAAUUUUUUUACUUACCCCUCAUCUCUUUUGUUUAUACUUAGCUUUCUGUGUUUCCCAUGGAUCUCCUUCUUCGUUGAUGGAUAUACUAUUGUGGUUGAUACUAGUGUUAUUAUUGCUUAUAGAUACAAUUGAUUAAUGCCAUACAUAAAAAAGACAAGAUGCGGGUGAAGAUCAGGUCGAAGACGCAGGAAUUUUACAGGAAUUUCAAAUGCGACGAUUUAAUUAUUGUACGGACCGGAACCAUGAAAAUUCAUGGGUUUCAAACAAGGUUCCAUCUACAUCAUCGUGCAUGCAUCGAGCCAAGGGCUAUAUCUACCUACAGCUAUGUAUAUCAUUCAGAGCAACAAAGGGAAGCAAUGAAGCAAACUUUGGAUGUACAUAGAUCGUUGAGGCCACCAAUGCCAAUGGCUCAACAACAAAUGGAUGAAUUUUGGAGGGACCGACAAAAGGAGAUUGAGAUGACAAAGGACUUCAGUGAGCACAUGAUCCCUAUGGCCCGCUUGAAGAAGAUCGUAUCUUCUCAAAAGGGUAACAUGAUGAUGACCUUUGACAUGCCAGCGUUCUUAUCAAAGAUGUGUGAGCUCUUUGUACAAGAACUUGCUGCGCGUGCAUGGGCAUGUGCCCAAUCUCAUAACCGAUGCAUCAUACUAGACAUGGAUAUUGCUGAAGCCGUAGCCUCUACUGAGUCUUAUGACUUUCUUGUUGAUAUCCUCCACAAUCACAGUGUGAAGCAAAAAUCCACUCCUUGUUCUUCCACCAAGCGUUGUAGGUUAGUUGAUCAACCUUCUACAUCUCACAUUCCCCACCAACAUCUGCUGCCACAGUUUGCUCCUACAUAUACUUUGGCCAUCCCUAUUACUCCUAGUUUAAUGCCAUUAAUUUCUCAAUGCACACCAUCCUCUUUUCCAUCCUUGCCACAAGAAAAGUUCCCAUUGAUGGCACCCACACCCAUUGUGAAUAGAUCAAUGUUGUUUAUCAAUAAUAUAGCAAGGGGUCUGGGCUUACAAGGAAACAAUAUCAAUGCAGUUGCCAACAAUAAUAUCCUAGACAAUAUUGUUGGUUGUAGUAGCCCUGCGGUUCUUGCAAGUAUGAUGAAUCCUGCUUUACUUGGGCCUUCAGGGGCACCACUAAAUCCUCCAAACUCCCAAUCCUACAACUGCACAAUGGAUAUAAUUAACUCCAAUGAUGCUUGUGGUUCCAAUAAUAGUAGCGUAAUUGUUGCAAAUCAAGCAAAUAUUGCUCCCUCUGGCCAUUUUUAUCCCAUUGCCCUUCAGUCCUCAUGCUCGACGUUCUUACAUAGUAACAACAAUGACACGAUUACUGCUAUACUGGAGGGUGUAGAUAUUAGCGACAUCAUGCAUGUUACAAGUGAUGUUGAUGCUGCUACAAAGGUUUUUAGUGGCCAAGAAGAACAACAUGAGAAAGAAACUAAUGUUGAGUGGCAUCAUCAAAAUGAGAUAUAUGAAAGUAUUGAUAUAAGAAUCAUCAAUGCUACUACUAGAGAUGGUAAUAAAUGUAGUAUUAGCUGGGAUGAAUUGGGAAUGGCCGAUGAUUCGUUGCUAGAUAAUUUUUUGGAGGAGCUUCAAGUAAGAAAGGAUGAUGUUUCGGACACCAGGAUUGCGUUCAACAAAGACCCAUUCCUUGAUGAUGCUGUCUUGUCAAAUCCAAGCACCAGUAAUGGCAACAAGUAAAUGAGGUGGCAAGUCUUAUUCAUCCCCUUUUGUAACAAUGAAGUUGUAACAUUCCUUCUUGUUUAAUAUACUGUCUUUUGUUUUGAGAGAAAUAAGAGAAUUAGAGAAUUUAUUAUAUGUUACAA
Sequence
(XM_015780237.2):
CUCUAGUAUGUCUUGUCCAAACAGAUUCUAAUUUGGCAAAGAUGCAUUCCCCCGUCUAAAAAAAAACCCCCUCAAAUCAAGUCUUUUUUUAUGGAGGGUUGAAUUGUUCCAUUUAUCUUUCAUUUUUUUCAUUAAUUUUUUCAGAUGUAAUAUUGUACUCUAUGUUCAGGUAACAAGUUUCGUGUUUUUACAUAUAUAUCGAUGUACAACUAACAGUAUUAUAUAUGAUUAACCUAUUUUACUUGGGUGUUGCUUGUUAGUCUGCUGCUAACAUACAAAAGCAAUUAAAUGUGUAGUAACUGAAAAGGUGGUGAGUCAUGGGAUAGAGGAUAUGUGGCACACAAACUAUAUAGUAGCAUACAAAAUUAAUAAAGUAUUAACAUACAAAGCUUGUUAGCUAUCUGCUAACAUAUAAGAGUAAUAAAGUAGCAAGUACGUGGAGUAUAAGUUAUAUAGCUAGGACCACAAUAAACAUUACAUGAUCUAUACAUGGCAAUGCAUGUGAACCAUGCACUUACUGCAAGCGGCAAUCCAGAGUAUAUGCGUGGACAACCUUGGUAUUAGGUAGCUAAUUACCAAAAUAAGAUAGCUGCUUGCGUUACACAAUUUACAAAAGACAUGCUAGAAUUUAAAGUAAAAUACAAAGAGGUCUAGCAGGAAAGGAGCCGAAAGUUUGCUUAGUUUGCUAGCAAGGGAUCAAGUACUUAUCUACCAUUCCAUUGACCCAUGCAUAUGUUAAUUAGUAUUGGCUGGAAGCAAGCUAGUAUAUAUAGUAUUAGCAUGCCUUGACGAUGAACGCCUAUAUUAAAGUAAAUAAAAGCAAAACAAAUUCCUCCAUACAUCAUGCAUGCAUCUAGAGCUAACUGUCCAUCGAUCAUCUAGCUAGCUUAGAGAUAGAUCAGUAUGGCACGUCAAUUCAGCAUAAAGAUACAUCUGUAUGGUAUAUGAGAAGACAAACAUAUGGCUGUAUAUAUGGUUCAAUUAACAAGCAAAUCAAGAUAAAACAAAACUACAUUGCUUUAUUUUGGUUGUCUUUAGCAGAGAGUAGUGUGGAAUGCAAGGUUUGGCCUUGUGAGCCCCACAGAUAUUAAAGCUACCCGUUUCAUUGAAAAAGAUACACGCAAAUCAAACCCACAAGAAACUAAUAAACUUUUUUCUUUCUUCAAAUCUCUUUUGUUUUCCUUCUCAACAUUAUAGAUGUCUAGAGAAAUCUGACCCUUUUGGGCCUAUAUAAACCAUCCUACCUUGCCUAGCAUGUUCAUCCUCACAUCAUAUUGUGUUCAUCCUCAUACCACCAACCAAUUAGUGCCAGUAGCACAUUUCUGCAGUUGUAGUUCAAGUAAGGUAUAUCAUUCAGAGCAACAAAGGGAAGCAAUGAAGCAAACUUUGGAUGUACAUAGAUCGUUGAGGCCACCAAUGCCAAUGGCUCAACAACAAAUGGAUGAAUUUUGGAGGGACCGACAAAAGGAGAUUGAGAUGACAAAGGACUUCAGUGAGCACAUGAUCCCUAUGGCCCGCUUGAAGAAGAUCGUAUCUUCUCAAAAGGGUAACAUGAUGAUGACCUUUGACAUGCCAGCGUUCUUAUCAAAGAUGUGUGAGCUCUUUGUACAAGAACUUGCUGCGCGUGCAUGGGCAUGUGCCCAAUCUCAUAACCGAUGCAUCAUACUAGACAUGGAUAUUGCUGAAGCCGUAGCCUCUACUGAGUCUUAUGACUUUCUUGUUGAUAUCCUCCACAAUCACAGUGUGAAGCAAAAAUCCACUCCUUGUUCUUCCACCAAGCGUUGUAGGUUAGUUGAUCAACCUUCUACAUCUCACAUUCCCCACCAACAUCUGCUGCCACAGUUUGCUCCUACAUAUACUUUGGCCAUCCCUAUUACUCCUAGUUUAAUGCCAUUAAUUUCUCAAUGCACACCAUCCUCUUUUCCAUCCUUGCCACAAGAAAAGUUCCCAUUGAUGGCACCCACACCCAUUGUGAAUAGAUCAAUGUUGUUUAUCAAUAAUAUAGCAAGGGGUCUGGGCUUACAAGGAAACAAUAUCAAUGCAGUUGCCAACAAUAAUAUCCUAGACAAUAUUGUUGGUUGUAGUAGCCCUGCGGUUCUUGCAAGUAUGAUGAAUCCUGCUUUACUUGGGCCUUCAGGGGCACCACUAAAUCCUCCAAACUCCCAAUCCUACAACUGCACAAUGGAUAUAAUUAACUCCAAUGAUGCUUGUGGUUCCAAUAAUAGUAGCGUAAUUGUUGCAAAUCAAGCAAAUAUUGCUCCCUCUGGCCAUUUUUAUCCCAUUGCCCUUCAGUCCUCAUGCUCGACGUUCUUACAUAGUAACAACAAUGACACGAUUACUGCUAUACUGGAGGGUGUAGAUAUUAGCGACAUCAUGCAUGUUACAAGUGAUGUUGAUGCUGCUACAAAGGUUUUUAGUGGCCAAGAAGAACAACAUGAGAAAGAAACUAAUGUUGAGUGGCAUCAUCAAAAUGAGAUAUAUGAAAGUAUUGAUAUAAGAAUCAUCAAUGCUACUACUAGAGAUGGUAAUAAAUGUAGUAUUAGCUGGGAUGAAUUGGGAAUGGCCGAUGAUUCGUUGCUAGAUAAUUUUUUGGAGGAGCUUCAAGUAAGAAAGGAUGAUGUUUCGGACACCAGGAUUGCGUUCAACAAAGACCCAUUCCUUGAUGAUGCUGUCUUGUCAAAUCCAAGCACCAGUAAUGGCAACAAGUAAAUGAGGUGGCAAGUCUUAUUCAUCCCCUUUUGUAACAAUGAAGUUGUAACAUUCCUUCUUGUUUAAUAUACUGUCUUUUGUUUUGAGAGAAAUAAGAGAAUUAGAGAAUUUAUUAUAUGUUACAA
Sequence
(XM_015780246.2):
CUCUAGUAUGUCUUGUCCAAACAGAUUCUAAUUUGGCAAAGAUGCAUUCCCCCGUCUAAAAAAAAACCCCCUCAAAUCAAGUCUUUUUUUAUGGAGGGUUGAAUUGUUCCAUUUAUCUUUCAUUUUUUUCAUUAAUUUUUUCAGAUGUAAUAUUGUACUCUAUGUUCAGGUAACAAGUUUCGUGUUUUUACAUAUAUAUCGAUGUACAACUAACAGUAUUAUAUAUGAUUAACCUAUUUUACUUGGGUGUUGCUUGUUAGUCUGCUGCUAACAUACAAAAGCAAUUAAAUGUGUAGUAACUGAAAAGGUGGUGAGUCAUGGGAUAGAGGAUAUGUGGCACACAAACUAUAUAGUAGCAUACAAAAUUAAUAAAGUAUUAACAUACAAAGCUUGUUAGCUAUCUGCUAACAUAUAAGAGUAAUAAAGUAGCAAGUACGUGGAGUAUAAGUUAUAUAGCUAGGACCACAAUAAACAUUACAUGAUCUAUACAUGGCAAUGCAUGUGAACCAUGCACUUACUGCAAGCGGCAAUCCAGAGUAUAUGCGUGGACAACCUUGGUAUUAGGUAGCUAAUUACCAAAAUAAGAUAGCUGCUUGCGUUACACAAUUUACAAAAGACAUGCUAGAAUUUAAAGUAAAAUACAAAGAGGUCUAGCAGGAAAGGAGCCGAAAGUUUGCUUAGUUUGCUAGCAAGGGAUCAAGUACUUAUCUACCAUUCCAUUGACCCAUGCAUAUGUUAAUUAGUAUUGGCUGGAAGCAAGCUAGUAUAUAUAGUAUUAGCAUGCCUUGACGAUGAACGCCUAUAUUAAAGUAAAUAAAAGCAAAACAAAUUCCUCCAUACAUCAUGCAUGCAUCUAGAGCUAACUGUCCAUCGAUCAUCUAGCUAGCUUAGAGAUAGAUCAGUAUGGCACGUCAAUUCAGCAUAAAGAUACAUCUGUAUGGUAUAUGAGAAGACAAACAUAUGGCUGUAUAUAUGGUUCAAUUAACAAGCAAAUCAAGAUAAAACAAAACUACAUUGCUUUAUUUUGGUUGUCUUUAGCAGAGAGUAGUGUGGAAUGCAAGGUUUGGCCUUGUGAGCCCCACAGAUAUUAAAGCUACCCGUUUCAUUGAAAAAGAUACACGCAAAUCAAACCCACAAGAAACUAAUAAACUUUUUUCUUUCUUCAAAUCUCUUUUGUUUUCCUUCUCAACAUUAUAGAUGUCUAGAGAAAUCUGACCCUUUUGGGCCUAUAUAAACCAUCCUACCUUGCCUAGCAUGUUCAUCCUCACAUCAUAUUGUGUUCAUCCUCAUACCACCAACCAAUUAGUGCCAGUAGCACAUUUCUGCAGUUGUAGUUCAAGUAUAUCAUUCAGAGCAACAAAGGGAAGCAAUGAAGCAAACUUUGGAUGUACAUAGAUCGUUGAGGCCACCAAUGCCAAUGGCUCAACAACAAAUGGAUGAAUUUUGGAGGGACCGACAAAAGGAGAUUGAGAUGACAAAGGACUUCAGUGAGCACAUGAUCCCUAUGGCCCGCUUGAAGAAGAUCGUAUCUUCUCAAAAGGGUAACAUGAUGAUGACCUUUGACAUGCCAGCGUUCUUAUCAAAGAUGUGUGAGCUCUUUGUACAAGAACUUGCUGCGCGUGCAUGGGCAUGUGCCCAAUCUCAUAACCGAUGCAUCAUACUAGACAUGGAUAUUGCUGAAGCCGUAGCCUCUACUGAGUCUUAUGACUUUCUUGUUGAUAUCCUCCACAAUCACAGUGUGAAGCAAAAAUCCACUCCUUGUUCUUCCACCAAGCGUUGUAGGUUAGUUGAUCAACCUUCUACAUCUCACAUUCCCCACCAACAUCUGCUGCCACAGUUUGCUCCUACAUAUACUUUGGCCAUCCCUAUUACUCCUAGUUUAAUGCCAUUAAUUUCUCAAUGCACACCAUCCUCUUUUCCAUCCUUGCCACAAGAAAAGUUCCCAUUGAUGGCACCCACACCCAUUGUGAAUAGAUCAAUGUUGUUUAUCAAUAAUAUAGCAAGGGGUCUGGGCUUACAAGGAAACAAUAUCAAUGCAGUUGCCAACAAUAAUAUCCUAGACAAUAUUGUUGGUUGUAGUAGCCCUGCGGUUCUUGCAAGUAUGAUGAAUCCUGCUUUACUUGGGCCUUCAGGGGCACCACUAAAUCCUCCAAACUCCCAAUCCUACAACUGCACAAUGGAUAUAAUUAACUCCAAUGAUGCUUGUGGUUCCAAUAAUAGUAGCGUAAUUGUUGCAAAUCAAGCAAAUAUUGCUCCCUCUGGCCAUUUUUAUCCCAUUGCCCUUCAGUCCUCAUGCUCGACGUUCUUACAUAGUAACAACAAUGACACGAUUACUGCUAUACUGGAGGGUGUAGAUAUUAGCGACAUCAUGCAUGUUACAAGUGAUGUUGAUGCUGCUACAAAGGUUUUUAGUGGCCAAGAAGAACAACAUGAGAAAGAAACUAAUGUUGAGUGGCAUCAUCAAAAUGAGAUAUAUGAAAGUAUUGAUAUAAGAAUCAUCAAUGCUACUACUAGAGAUGGUAAUAAAUGUAGUAUUAGCUGGGAUGAAUUGGGAAUGGCCGAUGAUUCGUUGCUAGAUAAUUUUUUGGAGGAGCUUCAAGUAAGAAAGGAUGAUGUUUCGGACACCAGGAUUGCGUUCAACAAAGACCCAUUCCUUGAUGAUGCUGUCUUGUCAAAUCCAAGCACCAGUAAUGGCAACAAGUAAAUGAGGUGGCAAGUCUUAUUCAUCCCCUUUUGUAACAAUGAAGUUGUAACAUUCCUUCUUGUUUAAUAUACUGUCUUUUGUUUUGAGAGAAAUAAGAGAAUUAGAGAAUUUAUUAUAUGUUACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.76%
ME_num:
MEP:
1.02%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
1.00
Avg Expression:
42.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.86115971781936 | 0.0095481626111681 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.11922026559758 | 0.0428731734688117 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.28573563430888 | 0.0349050054947951 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.89010068353885 | 0.0380874565789957 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.99214413828199 | 0.0198951742866554 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.70192011229293 | 0.037592264610509 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.31233690292865 | 0.0116584426387436 |