Chr:
Chr1
Start:
137593
End:
141558
Strand:
+
Ref_name:
LOC4326467
Sequence
(XM_015766964.2):
CCUAUGGAUAGGUGAUCGGUAAGGAAGACGUUCCUCAUUAAAUUAUAGUAGAGAAGCUAUCUGAUUUAUGCACGAAAAUAGGAAAAAUAGUAAAUUUAUGUGCAUACUUAUAUUCGCAAACGAUUGAAAUAAAAUAUGCUUUGAAAAUGAAACAGGCGGAGCACAUGACAACUGGCAUAUCGUGCCAAACCGAACCCUCCAGAAAGAUGAAGUCCCAAAGCAUAGAAAGCACUAUAAAAGUCGACCCACAAUAUGCACUAGGAGCAAUCGAUGGAUUGAGUAGCUUCUCUAGCCUUGACCUCCUAGCGCUCAGUUGUUAUACUUACCCUCUAAGGGCUACUAGGCCUCACUCAUCUCUUCGUGUAUAUUUAGCCUUUUAUGCUACCCGUGGAUCUCUUUCGUCAUUGAUGGGUAUACCGUUUGUGGUUGAUACCAGUUUUAUAAUUAUCUACGGGCAAAGAUGAUAAAUGCCAUAUAUCGAAAUGACAAGAUUAGGGUGAAGAUUAGGCCGGGGACGCAGGAAUUUUACAGGAAUUUCACAUGUAAUAGUUCAACCAUAGUAGGAACUAGAAACAUGAAAAUUUGUGGGUUGCAAACAAAGUUCCAUCUACAUCAUCGUGCAUGUAUCGAGCCAAAGGCAGGAUCUACCUAUACCCAUGUCUAUUAUUCGGAGCAACAAAGGGAAGGAAUGGAGCAAACUUUGGACGUACCUAGAUCGUUGAGGCUACCGACACCAAAGGCUCAACAACAAAUGGAUGAAUUUUGGAGGGAUCGACAAAAAGAGAUUGAGACAACAAAGGACUUUAGCGAGCAUGCGAUCCCUAUGGCCCGCUUGAAGAAGAUCGCAUCUUCUCAAAAGGGUAACAUGAUGAUGUCCUUUGACAUGCCAGCAUUCUUAUCGAAGAUGUGUGAGCUCUUCGUACAAGAACUUGCUGUGCGUGCAUGGGCAUCUGCUCAAUCCCAUAACCGUUGCAUCAUACUAGACACGGAUAUUGCUGAAGCCAUUGCCUCCACAGAGUCUUAUGACUUUCUUGUUGAUAUCCUCCAUAAUCACCGUGAGAAGCACAAAUCCACUCCUUGUUCUACACUUACUACAAAGCGUUGUAGGUUAGUCGAUCAACCUUCCACAUCUCGCCCGCCCUACCAACAUCAGCUGCCACUGUUUGCUCCUACAUAUACUCCAGCCAUCCCUAUUACUCCUAGUUUAAUGCCACCAAUUUCUCACUAUAUACCGUUCCAAUAUCCAUCCUUAUCACAAGAAGUGUCCACGAUGAUGGCUUCCGCACCCAUAGUGAAUAGAUCAAUGUUGCUCAUUCACAACAUAGCAAGGGGUCUAGGCUUACAAGGAAACAAUAUCAGCACAUUCGCCAACAAUAAUAUCCCAGACAAUAUUAUUGGUUGUAGUAGCCCCGCGGUUCUUGCAAGUAUGAUGAGUCCUGCUUUACUAGACGUUGCAGGGGCAUCACUAAAUCCGCCAAACUCUCACUCCAUCUGCACGAUGAACAUGAUCAACUCGAGUGAUCCCAGUGGAUCUAGCAUUGGUGACAUUAAUGUUGCAAAUCAAGCAAGUCUUGCUCCCUCUGAACAUUUUAACCCUGCUAUCCUUCAAGAGUCCUCAUGUCCUUCGUUCUUAUAUAAUAACAACAAUGACACGAUUGUUGUUGUACCGGAGGGUGUAGAUAUUAGUGGCACCAUGGAUGUUGCUGGUUUAGUUAUCAAUGGUCAAGAAGAAGAACAUGAGAGGAAAACAAAUGUUGAGCAAAAUGAGAUAUAUGAAAGCAUUGAUAUAGGAAUAAUCAAUGCAAGUGUUGCGGAUGGUAAUAAAUGCAGUAUUAGGUGGGAUGAAUUAGGAACGGCCGAUGAUUCAUUGCUAGAUAAAUUUUUGGAGGAGUUUCAAGCAAGAAACGACGGUGUUUUGCACAGCGGGAUUGUGUUGCAUGAAGACCAUUCCUAGGUGACGUGAUUUUAGCAAACCCAAGUAGUAGCAAUGCCAAUAUAAGUAAUUGAGUUGGCAAGUUUUGUUUAUGUCUUUUGUAAGAAUGAGGUUGUAACUCUUUUUCUUGUUGAAUAUAAUGUUGUUUGUUUGGAGAGAAGAAA
Sequence
(XM_015766966.2):
CCUAUGGAUAGGUGAUCGGUAAGGAAGACGUUCCUCAUUAAAUUAUAGUAGAGAAGCUAUCUGAUUUAUGCACGAAAAUAGGAAAAAUAGUAAAUUUAUGUGCAUACUUAUAUUCGCAAACGAUUGAAAUAAAAUAUGCUUUGAAAAUGAAACAGGCGGAGCACAUGACAACUGGCAUAUCGUGCCAAACCGAACCCUCCAGAAAGAUGAAGUCCCAAAGCAUAGAAAGCACUAUAAAAGUCGACCCACAAUAUGCACUAGGAGCAAUCGAUGGAUUGAGUAGCUUCUCUAGCCUUGACCUCCUAGCGCUCAGUUGUUAUACUUACCCUCUAAGGGCUACUAGGCCUCACUCAUCUCUUCGUGUAUAUUUAGCCUUUUAUGCUACCCGUGGAUCUCUUUCGUCAUUGAUGGGUAUACCGUUUGUGGUUGAUACCAGUUUUAUAAUUAUCUACGGGCAAAGAUGAUAAAUGCCAUAUAUCGAAAUGACAAGGGUGAAGAUUAGGCCGGGGACGCAGGAAUUUUACAGGAAUUUCACAUGUAAUAGUUCAACCAUAGUAGGAACUAGAAACAUGAAAAUUUGUGGGUUGCAAACAAAGUUCCAUCUACAUCAUCGUGCAUGUAUCGAGCCAAAGGCAGGAUCUACCUAUACCCAUGUCUAUUAUUCGGAGCAACAAAGGGAAGGAAUGGAGCAAACUUUGGACGUACCUAGAUCGUUGAGGCUACCGACACCAAAGGCUCAACAACAAAUGGAUGAAUUUUGGAGGGAUCGACAAAAAGAGAUUGAGACAACAAAGGACUUUAGCGAGCAUGCGAUCCCUAUGGCCCGCUUGAAGAAGAUCGCAUCUUCUCAAAAGGGUAACAUGAUGAUGUCCUUUGACAUGCCAGCAUUCUUAUCGAAGAUGUGUGAGCUCUUCGUACAAGAACUUGCUGUGCGUGCAUGGGCAUCUGCUCAAUCCCAUAACCGUUGCAUCAUACUAGACACGGAUAUUGCUGAAGCCAUUGCCUCCACAGAGUCUUAUGACUUUCUUGUUGAUAUCCUCCAUAAUCACCGUGAGAAGCACAAAUCCACUCCUUGUUCUACACUUACUACAAAGCGUUGUAGGUUAGUCGAUCAACCUUCCACAUCUCGCCCGCCCUACCAACAUCAGCUGCCACUGUUUGCUCCUACAUAUACUCCAGCCAUCCCUAUUACUCCUAGUUUAAUGCCACCAAUUUCUCACUAUAUACCGUUCCAAUAUCCAUCCUUAUCACAAGAAGUGUCCACGAUGAUGGCUUCCGCACCCAUAGUGAAUAGAUCAAUGUUGCUCAUUCACAACAUAGCAAGGGGUCUAGGCUUACAAGGAAACAAUAUCAGCACAUUCGCCAACAAUAAUAUCCCAGACAAUAUUAUUGGUUGUAGUAGCCCCGCGGUUCUUGCAAGUAUGAUGAGUCCUGCUUUACUAGACGUUGCAGGGGCAUCACUAAAUCCGCCAAACUCUCACUCCAUCUGCACGAUGAACAUGAUCAACUCGAGUGAUCCCAGUGGAUCUAGCAUUGGUGACAUUAAUGUUGCAAAUCAAGCAAGUCUUGCUCCCUCUGAACAUUUUAACCCUGCUAUCCUUCAAGAGUCCUCAUGUCCUUCGUUCUUAUAUAAUAACAACAAUGACACGAUUGUUGUUGUACCGGAGGGUGUAGAUAUUAGUGGCACCAUGGAUGUUGCUGGUUUAGUUAUCAAUGGUCAAGAAGAAGAACAUGAGAGGAAAACAAAUGUUGAGCAAAAUGAGAUAUAUGAAAGCAUUGAUAUAGGAAUAAUCAAUGCAAGUGUUGCGGAUGGUAAUAAAUGCAGUAUUAGGUGGGAUGAAUUAGGAACGGCCGAUGAUUCAUUGCUAGAUAAAUUUUUGGAGGAGUUUCAAGCAAGAAACGACGGUGUUUUGCACAGCGGGAUUGUGUUGCAUGAAGACCAUUCCUAGGUGACGUGAUUUUAGCAAACCCAAGUAGUAGCAAUGCCAAUAUAAGUAAUUGAGUUGGCAAGUUUUGUUUAUGUCUUUUGUAAGAAUGAGGUUGUAACUCUUUUUCUUGUUGAAUAUAAUGUUGUUUGUUUGGAGAGAAGAAA
Sequence
(XM_015766967.2):
UCCAUCCAGAAAGACUUGAUUUCUAGCAUUUAUAAUUUGUUAAAAAAAGAUUUGGUUUCUUUUGUUUUUGUGGGGAAAAAUACUUGAUUUAUAGCCCCUAGCUUACCUACCAUCGGUCUAUAAAUCAUGAAGUUUUAUUCCUUCAGUACCCCUUAUACUAAUGCCAUUUUUCUAUUAGUGAGCGGCACUUUUGUUUUUCCCCCUUAACAACUAAAAUACUUGGGAUUACUAGGACUCAAGUUUUUUGGGGAAUAAAGGGAGUGCUAUAUAUGCCUUGAACUAUUUCGUUUAUCUUUUAUUGUGUUUCACUAUUUAUUUGUAUGUGGUAUGGUCUCUUUGUUAAGCUAGCAAGUUCCAUGAGUUUAUAUAUCAAUGUACAAUUUGGAGUGGUAUAUUUGAUUAGCCCGUUUUCCUUAGGCACCGCUUGUUAGCUAACUGCUAACAUACAAAAGUAAUUAAGUAUGUAUAACAUUGAAAAGAUGGCGAGUCAUGAGAGAGAGCAAUGUGGCAAACAAACUCUAUACUAACAUUCAAAAGUAAAGUACUAACAUACAAAGCUUGUUAGCUUGUAGCUGAUGAAUAGCAUACAAAAGUAAUAAAGUAUUAAGUACAUGGAGUAUAAGUUAUGUAGCUAGGACCACAAACAACACAUGAUCUAUGCAUGGUAUGCAUGCAAACCAUGCACUUACUGCAAGCAAGUAGGCCAGGACAUCAUGGUUUAUUAUUAACUAGGUCAUUAGACAAUUGCUUGCGUUACACAAUGUAUAGAAGAAAUGUAGGAUAUUAAGCUAAAAUACAAAAUUCUCCAGCAGGAAAGGCGCCGAAAGUAUACUUAGUUUGCUAGCAAUGGAUCGAGUACUUAUCUACUGAUCUAGUCAUCGAUCCAUGCAUCCAUCCAUCAUUUAACCACGUAGCAUGUAUUGGCUGGAAUCAAGCUAUCACAUAUAUGCGUGAAUCUAAAGCAAAACAAACUCCUCGAUAUAUCUUGCAUACAUCUGGAGCUAACCGUCCAUUGAUUAGCUAGCUAACUUAGAGAUAGAUUAGCAUGUAUGACACAUCAAAUUGAAAUCAUGAUGCAUAUGCAUGGUAUAGGAGAGGACAAAUAAAUAUAUGGUUCAAUUAACAAGCAAGUCAAUUUGUGACAUGAUUGAUACGUUACGCAAAUAAACUACAAUACUUUAUCUUGGUUGUCUUUAGCAUAAGAAGUGUGGAAUGCAUGGUUUAGCCUUGUGAGCCCCACAUAUAUAAAGCUUGUUGUUUCACUAGAAAAGAUACACGCUAGGCUAAAAGAUUUCACCAAACCAACAAGAAACUAAUAAACCUUUUUUUCUCUUUCUUCAACUUUCUUUCGUCUCCCUUCUCAACAACACAGAUGUCAUAGAAACCAGAAUCUUUUGGGCCUAUAUAAACCACCCCACCUUGCAUAGUAUGUUCAUCCUUGUGUCAUAUUGUGUUCAUCUUCAUACUACCAACCAAUUAGUGCUAAUAGGUAGCAUUUUCUGCAGUUGCAGCUCAAGUAAGGUCUAUUAUUCGGAGCAACAAAGGGAAGGAAUGGAGCAAACUUUGGACGUACCUAGAUCGUUGAGGCUACCGACACCAAAGGCUCAACAACAAAUGGAUGAAUUUUGGAGGGAUCGACAAAAAGAGAUUGAGACAACAAAGGACUUUAGCGAGCAUGCGAUCCCUAUGGCCCGCUUGAAGAAGAUCGCAUCUUCUCAAAAGGGUAACAUGAUGAUGUCCUUUGACAUGCCAGCAUUCUUAUCGAAGAUGUGUGAGCUCUUCGUACAAGAACUUGCUGUGCGUGCAUGGGCAUCUGCUCAAUCCCAUAACCGUUGCAUCAUACUAGACACGGAUAUUGCUGAAGCCAUUGCCUCCACAGAGUCUUAUGACUUUCUUGUUGAUAUCCUCCAUAAUCACCGUGAGAAGCACAAAUCCACUCCUUGUUCUACACUUACUACAAAGCGUUGUAGGUUAGUCGAUCAACCUUCCACAUCUCGCCCGCCCUACCAACAUCAGCUGCCACUGUUUGCUCCUACAUAUACUCCAGCCAUCCCUAUUACUCCUAGUUUAAUGCCACCAAUUUCUCACUAUAUACCGUUCCAAUAUCCAUCCUUAUCACAAGAAGUGUCCACGAUGAUGGCUUCCGCACCCAUAGUGAAUAGAUCAAUGUUGCUCAUUCACAACAUAGCAAGGGGUCUAGGCUUACAAGGAAACAAUAUCAGCACAUUCGCCAACAAUAAUAUCCCAGACAAUAUUAUUGGUUGUAGUAGCCCCGCGGUUCUUGCAAGUAUGAUGAGUCCUGCUUUACUAGACGUUGCAGGGGCAUCACUAAAUCCGCCAAACUCUCACUCCAUCUGCACGAUGAACAUGAUCAACUCGAGUGAUCCCAGUGGAUCUAGCAUUGGUGACAUUAAUGUUGCAAAUCAAGCAAGUCUUGCUCCCUCUGAACAUUUUAACCCUGCUAUCCUUCAAGAGUCCUCAUGUCCUUCGUUCUUAUAUAAUAACAACAAUGACACGAUUGUUGUUGUACCGGAGGGUGUAGAUAUUAGUGGCACCAUGGAUGUUGCUGGUUUAGUUAUCAAUGGUCAAGAAGAAGAACAUGAGAGGAAAACAAAUGUUGAGCAAAAUGAGAUAUAUGAAAGCAUUGAUAUAGGAAUAAUCAAUGCAAGUGUUGCGGAUGGUAAUAAAUGCAGUAUUAGGUGGGAUGAAUUAGGAACGGCCGAUGAUUCAUUGCUAGAUAAAUUUUUGGAGGAGUUUCAAGCAAGAAACGACGGUGUUUUGCACAGCGGGAUUGUGUUGCAUGAAGACCAUUCCUAGGUGACGUGAUUUUAGCAAACCCAAGUAGUAGCAAUGCCAAUAUAAGUAAUUGAGUUGGCAAGUUUUGUUUAUGUCUUUUGUAAGAAUGAGGUUGUAACUCUUUUUCUUGUUGAAUAUAAUGUUGUUUGUUUGGAGAGAAGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.07%
ME_num:
MEP:
19.51%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.99
Avg Expression:
28.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.3645446581376 | 7.31586074624418e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.13845342277034 | 2.90242198733124e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.19177135572468 | 4.27124263100542e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.49284927739716 | 2.31012284559261e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.34142683986314 | 5.68449713352905e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.07556645333907 | 5.94923486447072e-05 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -3.93287448302834 | 5.18520241346763e-12 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.65470125598471 | 0.0124123755927514 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.82452667476588 | 0.0433693092498526 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.29980410393717 | 0.0113756036879655 |
| 11 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 1.46123875613257 | 0.0342557484777621 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.54333640846422 | 5.00842450239285e-09 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.22184201534361 | 2.63021275417928e-11 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.32453743648953 | 0.00143754343262676 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.03397148702856 | 0.0229588588555071 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.43269330569295 | 0.00414521688177412 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.16255143686328 | 1.29371507363322e-05 |
| 18 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -5.22797089524971 | 0.000656690004779996 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.64537779887994 | 6.94390796451185e-09 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.30110014633107 | 4.35971544989592e-05 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.10406715757462 | 6.85845235095976e-11 |