Chr:
Chr1
Start:
23408591
End:
23411237
Strand:
+
Ref_name:
LOC4325957
Sequence
(XM_015779772.2):
CUAUAUCCACGCUGCCCAGCGGCGCCCACCUCGAUUCCCCCUUCUCCUCCACACCACCGCGCCUCACUAGCCUCGUGCCCUCGUAGCUGCCCUCGCGCGCCACCACCAUGCCGUCCGCCAUGAACAUGAUCACCGCCGCCUUCCGCCGAUACCUCGGCUGCUUCUCCGCCGGAUCAACCCACCGCCGCCGCCGCGGCGCCGCUGAACCCGUCCUCGCCGGCUCACUUACACUUCCCGCCGCCGCCGGCGGUGACAACGCGGCCAGGCGCCUUGAUGUCGUCGUCCCCGCCCCCAGCCGCCCUGAUGGUGUCACUGUGAGCGGCGAAGAUUUCAUCGGUAGCCUUCCUGGCCAUGUCCGCUCCGCCAUCGUGUCGCGCCUCCCGGUCGCGGACGCCGCCGCUCGCACCGGCGUGCUGUCGUCGUCGCAGUGGAACGGGCUCUGGUCGUCGACGCCGCUCGUGUUCCAGGACUCCGACCUCAUCCUCGCCGCGAACUUCACCAGCGUGGCCCCCGUCGCCGCCACCGUGUCCCGCGUCAUCGAGAACCACCCGGGCCCCUUCCACACCGUCACCCUGACCAGCUACUUCCCGGAGUCCGAGCGGGACACCUUCGCCGGCUGGAUCCGCGCCGUCGCCGCCAAGGGCGUCCGCGACCUCACCCUGCACAACAUCCCCUGGUCGGGCCUCCACGUGCUCCCCGCCGACCUCCUCCAGUGCUGCGCCGCCCUGGAGCGCCUCCGCGUCUGCGUCUGGCGGUUCCCGGCCACGGCCGGCGUCCUCCACCCCGGCGGCGGCGACGGCGACGGCGCCGCGCCGCCGUCGUUCCCGCGCCUGAGGGAGCUCGUCCUCAACAGGAGCGCCAUCGAGGAGGCCGACCUGGAGAACGUGGUGGCGUGCAGCCCGGCGCUGCGGACGCUGGUGCUCGCCUUCAGCCGUGGCGCGCCGGGGCGCGUCCGCCUCGCCAGCGGCAGCCUCCGGUGCGUCGUGCUGUGCCAGUCGCUGGUGGACGAGCUCGCCGUCGUCGCCGCGCCGCUGCUGGAGCGGAUCGUGCUGCGGUGGUGCGCGUCGGGCACCCACCACGGUCACCUCAUGAGGAUCAGGAUCAGCCGGGCCUCGUCGAUCAAGGCGAUUGGUUACCUCAAACCAACCUGUCAUGGCCUGCAUAUUGAUGCCACUGUUAUAAAGCCUGGGAUAACGGCUAGCCCCGAUGAAGUGGCUGUUCCAAGCGUCAAGAUAUUGGGUUUACAAGUUCGAUUUGGAGUUGCUGCGGAAGCAACGAUGGUGUCCUGCAUGCUCAGAUGUUUUCCUAACGUUGAAACGCUGCAUAUCAUGCCUAUCGAAGAUCCUCAGUCUACCCAGCUUGAUGACUUUGAGUUCUGGGAGGAGAUCAAUUCAGUUGAAUGUGUCAGAUCCAGCAUCAAGAAGGUAGUGUUCCAUGGGUUCUCCUGGAAGAAUUCUGAGAUAGCGUUCAUCAAUUCCAUCGCCGAAGGAGGACUGGUGCUCGAGAAGAUCUGUAUCUUCCAGAGUCGACAUGGUGCUGCCCCAGAUGAUGAUGAACUGAAUGCUAAGCUGAGCAUGGUAGCUUCUCUGAACAUCGGCCUUGGCCGUACAGAGAUCAUAUUUUCAGGUGAAGAUCCAACCUGGUGCUAUAGGGCGGCGGCUGAUCUUUCUCGUGCUGAUCCUUUUGAUUGCUGCCGUUGAAGAUCGAUGUCUCUGUGCUUUGAUCAUCUUCGUACUAUAUAUACAUUUUGUGCUUCAGAAUGUCACACAGUCUGCAAAGGUUGCUCAAGGUAGUUAUAUAGCGAAUAAAUAUGUGACAUCUGGAAAUUUUAUCAUGUGUGUGUACCAGUUAAAUUCUAUCCUGUGGUAUUAAUAAAUGGUACUGGCGAGGCAGUGUGCAACGCUUUGUACUGCUGGAUUGUGUUUUAAUUUCCUUGAGCUUCUUGUUUCUGUUGUACUGAAUGACAAUGAUUCAAUCUCAUGGAUUUCCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.93%
ME_num:
MEP:
2.85%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
1.00
Avg Expression:
72.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.56614326620243 | 0.0238946548707129 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.38027351015193 | 0.0268180449871842 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.99647007282078 | 0.00790470666165642 |