Chr:
Chr1
Start:
7157742
End:
7164405
Strand:
+
Ref_name:
LOC4325878
Sequence
(XM_015766155.2):
UUUCCCUUCCAUUCCACCCCCCUCUCUCUCUCUUCUCCACUCCAAAUCCCUUCUUACCCUAUUCCCCUCCCCCCGCAGCUUCUCUUCCUCCUGCAGUACUCGCCGCCACCACCACCGCGCCGCCGCCGCCGGCCGCGUUCCGAGACCCACUCGAUCGGAAUCCACCGCGGCGCGCCCGCGCGCCUGCGUCCUCUUCCUUCCCCGGGAGCCGACCGACCACGGCGACCAGUCGAUCUCCCUCUCCGGGCGCCAACCGCGUCUUAGCUUCAUCGAAUCCACCGCCCCACCCCGCAUCUCCUCCUCCUCCUCCGACGACGACGACUACUACUAGUCUUCUCCAAUAAGCCCCCCUCCCGCUCCCCCCGCCUGAAGAAGAAGCAGCAGCUAGCUCCGGGGAGAGGUCGACGGCGCGCCGGGUAGAUCGCGCCCCGCCCCGCCUGCGUCGCGGCUGUCGGAGCAAACGCAAACCCCCCAGGUUGUUCUAGCGUGUGCAGCGGCUAGCUGAUUGAUUGUCUUCUGUGAUAUAUCCAGAGCUCGUGUUUUGUGGUUUGUGGUUUGUGGUUUGUGCUUGGAUUGUUGAUGUGCUAAUUCGCGGCGUUACAAGAUCACUGCUGGAUUGAUAUUGAGUUGUGCCUCGGCUGUGCUAGCUGUGUGUUGAUUCUCUCCUCGUCGUGGUGAUCGAUAUGGAGAUUGUUGCAGUAGAUCAGGAGGGAGCUCGUGUUGUUGGGACGAACUGUAUGCUUGCUCGUGGUGGAACUGGUGCUGUAGCGCCAGUGUUGGAGCUGACAGCGACGCCUCGUCAGGAUGCAGCCGCUGAAGCUGGUGUAGACGAACCGGCACAACACCAAUGCGAGCAUUUCUCCAUAAGAGGGUAUGUUGCUCUUCUUCAGAAGAAGGAUCCAAAAUUCUGCUCUCUAUCUCGGAUUUUCCAUGACCAGAAAAAAUGUGAUGAACACAAAGCUAGUUCAAGCCCAUUUUCUGUAGCAAAGUUUCGACGAUGGGAUUGCUCGAAGUGCUUGGAUAAGUUGAAAACUUCAGAUAAUGGAACAGCACCAAGAACUCUUCCCGCAAAGCAGAAUGGCACAAGUGAUGGUUGCUCCAUCACAUUUGUUCGGAGCACUUUUGUGCCUGCUAGUGUUGGUUCCCAAAAAGUGUCUCCUAGCACACAAUCAUCUCAAGGGAAGAAUGCUGAUAGAUCAACUCUUCCAAAGAGUGUGCAAGAAGGCAAUGACUCCAAAUGCAAUGCGCCUUCUGGCAAGAAUGGAGCUGCUGAGGCCAAUACUGAUUCACCAAUGAAAGAUUUGCAAGGGCCAGCCCAAAAUUAUGAUGUGGCAGCAAAUGUCUCUGAGGACAACACUUCUGUUGAUGUUGGGGCUUUACCUGAAGUUCCCCAGAUUACAUGGCACAUAGAAGUAAAUGGUGCAGAUCAACCUCCAUCCACUCCAAAACUUUCUGAAGUGGUCCUCAAAAGAAAUGAAGAUGAAAAUGGAAAAACUGAAGAGACUCUUGUUGCUGAGCAGUGCAAUUUGACCAAAGAUCCUAACCCAAUGUCUGGAAAGGAACGUGAUCAGGUUGCUGAGCAGUGCAAUUUGACCAAAGAUCCGAAACCAGUGUCUGGGCAGAAAUGUGAGCAGAUCUGCAAUGAGCCAUGUGAAGAAGUUGUUCUCAAAAGAAGCUCCAAAUCUAAGAGGAAGACGGAUAAGAAGUUGAUGAAGAAGCAGCAGCACAGCAAGAAACGCACUGCCCAGGCUGAUGUUUCAGAUGCAAAGCUUUGUCGGAGAAAGCCAAAAAAGGUGCGGCUUCUAUCAGAAAUUAUAAAUGCUAACCAGGUUGAGGAUUCUAGAAGUGACGAAGUUCAUCGUGAAAAUGCCGCUGAUCCCUGUGAGGAUGAUAGAAGUACCAUCCCGGUCCCGAUGGAAGUAAGCAUGGAUAUUCCUGUUAGCAACCAUACAGUGGGAGAAGAUGGGUUAAAAUCAAGUAAGAACAAGACAAAACGCAAAUACUCUGAUGUUGUAGAUGAUGGAUCAUCACUUAUGAACUGGCUGAAUGGAAAAAAGAAAAGAACUGGAAGUGUGCAUCACACAGUUGCUCAUCCAGCUGGGAAUUUGAGCAACAAAAAAGUGACACCCACUGCGAGUACUCAGCAUGAUGAUGAGAAUGAUACUGAAAAUGGUCUUGACACAAAUAUGCAUAAGACAGAUGUCUGUCAGCAUGUAUCAGAAAUCUCCACACAGAGGUGCUCAUCAAAGGGGAAAACAGCGGGUUUGAGUAAGGGGAAAACACAUUCAGCUGCUAGUACCAAAUAUGGUGGUGAAAGCACCAGAAAUGGUCAGAACAUACAUGUACUCAGCGCAGAAGAUCAAUGCCAGAUGGAAACCGAAAACUCUGUUCUGAGUCACUCGGCAAAGGUUUCUCCAGCUGAGCAUGAUAUCCAAAUUAUGUCUGACCUUCAUGAGCAGAGUCUACCCAAGAAGAAAAAGAAGCAAAAACUUGAAGUGACUCGUGAAAAACAGACCAUGAUAGAUGACAUCCCCAUGGAUAUUGUUGAACUGCUAGCUAAAAACCAGCAUGAGAGGCAGCUUAUGACUGAGACUGAUUGUUCUGACAUCAACCGUAUUCAAUCCAAGACAACUGCUGAUGAUGAUUGUGUAAUAGUAGCUGCCAAGGAUGGUUCAGAUUAUGCAUCAAGUGUGUUUGACACUAAUUCCCAACAGAAGUCCUUGGCAUCCCAAAGUACACAGAAGGAGUUACAGGGUCAUUUGGCAUUGACCACACAAGAGUCUCCACAUCCUCAGAACUUUCAGUCUACUCAGGAACAGCAGACACAUUUGCGGAUGGAAGAAAUGGUCACUAUUGCUGCAAGCUCACCACUAUUUUCACAUCAUGAUGAUCAGUAUAUUGCUGAAGCACCAACUGAACAUUGGGGCCGUAAGGACGCAAAGAAGCUAACGUGGGAGCAAUUUAAGGCCACUACAAGAAAUUCUCCAGCAGCAACAUGUGGUGCUCAAUUUAGACCUGGUAUCCAAGCAGUUGACUUGACUUCUACUCAUGUCAUGGGAUCUUCCAGCAAUUAUGCAUCUCGCCAACCAGUAAUUGCGCCACUGGACCGCUAUGCUGAAAGAGCGGUUAACCAGGUCCAUGCAAGAAAUUUUCCAAGCACAAUAGCAACCAUGGAAGCGAGUAAGUUAUGUGAUCGGAGAAAUGCUGGACAAGUAGUCUUGUAUCCUAAAGAAUCCAUGCCUGCGACGCAUCUUCUGAGAAUGAUGGAUCCAUCAACAUUAGCAAGCUUCCCCAACUAUGGAACUUCUAGCAGGAACCAGAUGGAGUCUCAACUUCAUAAUUCUCAGUAUGCACAUAAUCAGUACAAAGGAUCAACCAGCACAUCAUAUGGCAGUAACCUGAAUGGAAAGAUUCCAUUGACAUUCGAAGACUUAUCACGGCAUCAGCUGCAUGAUCUGCACAGACCUUUACGCCCACAUCCUAGAGUUGGUGUGCUUGGCUCCUUGCUGCAGAAGGAAAUUGCAAACUGGUCGGAGAACUGUGGCACACAAUCUGGUUAUAAGUUAGGAGUGUCAACAGGAAUAACAUCGCAUCAGAUGAACAGAAAGGAACAUUUUGAAGCCCUGAAUUCUGGAAUGUUUUCAGCAAAAUGGAAUGCAUUGCAGUUGGGUUCUGUUAGCUCCAGUGCAGAUUUUUUAUCAGCGAGGAACAGCAUAGCUCAAUCUUGGACCAGAGGCAAGGGUAAAAUGGUUCAUCCCUUGGAUCGGUUUGUGAGACAGGAUAUCUGUAUAACUAACAAGAACCCAGCUGAUUUUACUACAAUCAGUAACGAUAACGAGUAUAUGGAUUACCGCUGAAGCAGAAAGUGGUGUGCAUAAUUCCUGAACAUUUACAAUCAUACAUUUCAUCUUUAUGGCGCCAAAUAGUCAUACUGUAAGAGGAGGGCUUUGCUGGAUCUGCUGUAAGGCUUCUUGUAAGUUGUGGAUGCCCCAUUUUCUGGAUGGGAACCUGCCAGACAGUGAACAAGGGCUUUGCAAGGUGCAGCAUCCGGUUUUUGUUUUGCCAGUCCAAGAAACGUCCUCCUGUUACUUUGUAGUUGUACUCAUACUAGUGCGCUUGUUUGUACAAGGAGAAAUGUGUAACCUUGUUGAAAAAAUGUCUCCCCCAUUUUGUAAUUACCAUAAGGAGGUUUAUAGUGUUGUGAGCUGUGUGUGACUGACGGCGAGAAAUGGUUUUGUCGGUGUUAAGGUUGAAACGACUAGCUCUCGUUAUCAAUGUGUUGUAAACUUCUAGAUUGAUGUGUUACCUUACUCUUGAAGUCAACACCGGAGAAUUUACAGUACUUUUUUGCCGUGCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
97.56%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.62
Avg Expression:
10.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.12217955951467 | 1.81512983561104e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.28608917020123 | 1.81311066358717e-20 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.13431734730557 | 8.46486581170102e-13 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.05940649834993 | 3.82622562465216e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.37000117844589 | 3.75384197229086e-20 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.20688732884201 | 3.20061677883374e-19 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.28199168459675 | 1.615768392387e-22 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.42486361940035 | 1.0772087851748e-18 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.452184202035 | 1.69993977502229e-30 |