Chr:
Chr1
Start:
36622795
End:
36627664
Strand:
+
Ref_name:
LOC4324802
Sequence
(XM_015765986.2):
AUAUAUACUUAUCGUGUUUCUCUGAAGACUUUGCUAUAUACAAGUUGGCCAAGAUCACCAAUAAGGAUUUGCCUAUCCUUCUCUGGCGCUCCUGAAUCCUCUUAGAUGGUUAUACCUUGGUGUUCGUCCAUGAUGCGGCUUUUGUGGUUCUUGUUCGCGCUUCUUCUUGCCAGAUCGGUGGCAGAUGCUGCAACUGCGAACUACACUUUCACUGUGGAAAGCAUGCGAGUCAGUCGGCUAUGCAACAGCACUGACAUUAUUGCGGUGAACGGCCUACUGCCAGGCCCAAUGAUAGAAGUGAAUGAAGGUGACGCAGUUGCUGUCGAGGUCAUCAACGGAUCACCAUAUAACUUAACCAUACACUGGCAUGGCAUACUCCAGCUACUGACGCCAUGGGCGGACGGCCCGAGCAUGGUCACGCAGUGCCCUAUCCAGCCGAACAGCUCGUACACGUACAGGUUCAACGUCACCGGACAAGAAGGCACGCUGUGGUGGCACGCCCACUCCUCCUUCCUGCGCGCCACCGUGUACGGCGCUCUCAUCAUCCGGCCAAGAAACGGCUCCGCCUAUCCCUUCCCCGCGCCGGACCAAGAGGUCCCCAUCGUGCUUGGGGAAUGGUGGAGCCGGAAUGUCGUCGACAUCGAGAGCGACGCCGUCUCAUCUGGCCAGCUUCCCAGAGAAUCCGACGCGUUCACCGUUAAUGGUGUUACCGGCGAGCUCUACCAAUGCGCAAAUGACACGUUCACGGUGGACGUGCAGCCCAACACGACGGUGCUACUCCGGGUCAUCAACGCUGGACUCAACACGCACCUCUUCUUCAAGGUGGCCGGCCACGCGUUCACCGUCGUGGCCGUCGACGCGUGCUACACCGCCAACUACACCACGGACACGCUCGUGCUCGCGCCGGGGCACACCGUGGACGCGCUCAUGGUCACCAACGCGUCGGCCGGCAGCUACUACAUGGCGGUGCAGGCGUACGACAGCCUGUCUCCGACCACCAUGGCCGUAACCGACGACACCACCGCCACGGCCAUCGUGCACUACAACACCACGUCGACCAAGAAAAACGCGACGCCCGUCAUGCCCACCAUGCCCCAGAGCUCCGACUCCGCGACGGCCAACGCCUUCUACUUCGGGCUGAGGGGCCCGCCGUCUCCCAGCGCGCCGGCCGUGCCGACCAAGGUGGACGUGAACAUGACCAUCGAGCUGGGCCUCGGCCAGCUGCCGUGCGACUCCACACAGAGCAGCUGCUCGGGGAAAUCCGUCGCGGCGGCGAUGAACGGCGUGUCGUUCCGCCUCCCGUCGCAGAUGUCCCUCCUGGAGGCGCAGUUCAACCGCACGCCGGGGGUGUACACCGCCGACUUCCCGGACGCCCCGCAGCCGAGCGGCACGCCGAUGGUCGAGGGGACCAAGGUGCGGAGGCUCAAGUACAACUCGACGGUGGAGAUCGUGCUGCAGAACCCGACCGCCUUCCCGUCGGAGAACCACCCGAUCCACCUCCACGGCUUCAACUUCUUCGUGCUGGCCCAGGGCCUCGGCAACUUCACGCCGGGCAACGUGAGCGGCUACAACCUCGUCGACCCGGUUUCGCGCAACACCCUCGCCGUGCCGACCGGCGGCUGGGCCGUCAUCCGUUUCGUUGCCAACAAUCCAGGCAUGUGGUUCUUCCAUUGCCACCUUGACGCGCACGUUCCGAUGGGGCUCGGCAUGGUGUUCGCGGUGGAUAACGGGACGACGCCUGACUCCUUCCUCCCUCCGCCGCCUGCCGAUCUGCCGAAGUGCUAGAACCUGCAAGAUUCUGGCGUUGGUGUCAAAUUGUAAUGCACUUUCGUAGCCAAAUUUUACUUCAUAUUUGUUCUUGUGUUUGUGUAAAUGGAGUACAGGAGGCACGAAACGAGGUAGUGCCGUUCGUUUAUUUGUUCUGUGUAUGUGUAUCAUGUGUAAACUGUAAAGAGGUCUGUUUUUUUUUUCCUCUCCGGGGGAACGUGUAAACUGUAAAGCAACAAAUGUCAAACUUCAGAUUCCUUUGACUGUGUUAAACAUGAAUUUAUUCCAGGAUACCAAUUAAGCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.39%
ME_num:
MEP:
35.77%
HE_num:
HEP:
39.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.78
Avg Expression:
70.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.85798558926043 | 5.73084131640826e-30 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 6.74618851184349 | 3.71402254715099e-18 |
| 3 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.77102190036193 | 0.0299688791157613 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.75289459880619 | 0.0458122992531842 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.75216866862302 | 1.79368669556906e-09 |
| 6 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.38202400496379 | 0.0189181163281152 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.9013060978068 | 1.17924376911039e-05 |
| 8 | Nipponbare // leaf // wild_type_plus_1hr_shade--/--Nipponbare // leaf // wild_type_plus_1hr_white_light | -1.03826015117428 | 0.0107754823028216 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.46278626688186 | 3.92466540104258e-59 |
| 10 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.02856156351759 | 0.014109946080169 |
| 11 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -2.29844455625827 | 2.91932701167229e-110 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.92962592126071 | 7.80062102458617e-21 |
| 13 | 9311 // leaf // control--/--9311 // leaf // salt | 2.56405689251435 | 4.02532067857353e-42 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.62781707342843 | 6.11949324509762e-24 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.13325063351348 | 0.0218712322560046 |
| 16 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.25425559685283 | 4.69711138096046e-17 |
| 17 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.01594925222587 | 0 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.08851385487565 | 0.00880609908266762 |
| 19 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.32228435030463 | 8.59056590420174e-31 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.13009426121978 | 1.48283287441392e-15 |