Chr:
Chr8
Start:
9256921
End:
9260715
Strand:
+
Ref_name:
LOC112939907
Sequence
(XM_026027596.1):
AUGGCUAUUGGGAAUGAAUCAAAUCAGAUGAAAGAAGCGAGGAAUCCUCUUUUCGACUCUGACUCCCCCACUCCAGUCGUUGCUUUUCUUUCUGUUACUUCGAAAGUUGCUGCUUCAGCUUCAGCCACGCGAAUUCUCGAUAUUCCUUUUUAUUUCUCAUCAAACGAAUGGCAUCUUCUUCUGGAAAUCCUAGCUAUUCUUAGCAUGAUAUUGGGGAAUCUCCUUGCUAUUACUCAAACAAGCAUGAAACGUAUGCUUGCAUAUUCGUCCAUAGGGCAAAUCGGAUAUGUAAUUAUUGGAAUAAUUGUUGGAGACUCAAAUGAUGGAUAUGCAAGCAUGAUAACUUAUAUGCUUUUCUAUAUCUCCAUGAAUCUAGGAACUUUUGCUUGCAUUGUAUUAUUUGGUCUACGUACCGGAACUGAUAACAUUCGAGAUUAUGCAGGAUUAUACACGAAAGAUCCUUUUUUGGCUCUCUCUUUAGCCCUAUGUCUCUUAUCCCUAGGAGGCCUUCCUCCACUAGCAGGUUUCUUCGGAAAACUCUAUCUAUUCUGGUGUGGAUGGCAAGCAGGCCUAUAUUUCUUGGUUUCAAUAGGACUCCUUACGAGCGUUCUUUCUAUCUACUAUUAUCUAAAAAUAGUCAAGUUAUUAAUGACUGGACGAAACCAAGAAAUAACCCCUUAUGUGCGAAAUUAUAGAAGAUCCCCUUUAAGAUCAAACAAUUCCAUCGAAUUGAGUAUGACUGUAUGUGUGAUAGCAUCUACUAUACCAGGAAUAUCAAUGAACCCCAUUCUUGCAAUUGCUCAGGAUACCCUCUUUUAGCUGCUAGGUCUAUUUCUUAGUUCAAGAUCCCUCUUACUAACUGGAAUAAAAGAAUUAGUAGAUCUGUUCCGCCCAAAAUGGGAAUGGGCGCUAGGGUAAUGAACUUAUAAUCAUGGAAUCGACUCGAUCAUCAGAUUAUAAGUUCAUUCCAUACCGGACCAGACCGUGCACAUUCUUAUUAUGAGAAGGGGUCAUUCGAGCCUAUGGAAAUAGGAUACUCUGUUUACAUAGAAAUCCCCACGUCCUUACAUUCUAUUUAGGAUUAGGAAUAGGUGUAAUCAGACCUGCUUUUGACAUAUCUAUCCUAUCCUUAUUUGGGUACCAUAUGCACCUCUUUGGGCUUCUAUUGAAUCGAGAAAUUGGAUUGUACAUCUUUUUGAUUUUGAUACAUAUAAGGUGUCCUACGGAUAAUGCAAAUCGAAGCUAUUUGAUGUCUGACUCAGGCCUAUAUGACCGAUCGAUCGAAAUACUCCAAGACUCCACCUUUGUCAUAUAUUCCAUAUAUCACAUUAGAUAGAUAUCAUAUUCAUGGAAUACGAUUCACUUUCAAGAUAUCACAUUAGAUAGAUAUCAUAUUCAUGGAAUAUGAUUCACUUUCAAGAUGCCUUGAUGGUGAAAUGGUAGACACGCGAGACUCAAAAUCUCGUGCUAAAGAGCGUGGAGGUUCGAGUCCUCUUCAAGGCAUAAUACGGAGAAUGCGCAUUCAAUGAGCAUUCCCCGUAGAAGUAUUCCGGAAAUCUGCGCCUGGCGCUCUCCUCUAUCUUCUGAGGUCCUUAACCACUUCCCUGAGAAAAGGAGACAGUAAAAGCCAAAAUAGACUAAAUAUAGCCUGAACGAUCCUAAAAAUCCCUCGAAGGAGAUAAUAUAAUAAAGAACCCAAAGCAGACGGUAUCCUACUGCAAGGGUGGUCUUAAGAAUCCAAAAGAGGUUGCUCAGAAGAGAUAGAUGUAUCCCAACCUCUAUUGCUCUCGCGUAAAGCCUUUUUUUUACGCGACAGGAAAAAGUGACUACGAAUUCCCCUUUUUGUUUGCGAAUCCCUGUUUGUAUCCUUUGAGCGCACGCCCAUAAGUAGCGAUCAAGGAAAUCGAUCAAACGAUCCCAAUACCGUGAAAGAGAAACUUCCCAGAUCCAGGGAAGCUUAUCAUAAAGGGCUUCGACAAGGGGUUUUAUUCGUUCUUUGAGCAAAAAGAUAAAGAUCGGAUAGAUUCGAACCGCAAUUGCAAAGGUAAUCACUACUAUGCCAGCCCAAAUCAUGAUCUUCACCAACUUGGAUUUGGUUCUCUCGCGAAAAUCGCGAGUUGCAGAGAUGAGAACCAUGAAAAGCAAGAUCCCGAAUAAGAAAACAGAAACCGAGGAAACCACAAGAGUGAAGACUAGUAGAGUCUCGUCUUUUGUCAUUCUUUGCUCCUUUUUCACUCAAUGAUUCAUUCGAAUUUCCCGACCAAAAAUUCUAUAUGUCUAUUCAUAGGGCCUCGUUGCUAAGUGCUACAAGAUCUAGUGCACUGGAACUCGUGGUUAUGGACCCGAAUCCUUUAGUAUGGAACAUUGUCUUUUCCAAGUAAAAACCCCCAGUAUAUGAAAGAAUGAAAAGGUGCUUUCGUUCUUUUCUUGUGGAAUAAGAAGCCCUCGUACCUUAAUGAAAGGAAAAUAGGAAUUUUUCAUUAGGUAUUUGACCAAAUAGGAUCGUCCAGUUCCUAUAGAACCUAUCACUAAAAUACCCGAUAGGGCUAAGCGGAACGAAAAGGAUUUUCCCUGAGAUGGUAAAUGAAAACGAUUAGCCCCAUACGAGGUUUGGGAACAAGUGAUGAGCAAGGAAUAUACGUCUUUCUGCUAAAGAGGAUCUAUUAAACUCAUAAUUCAUUAGAUCCUUGUUAUCAAUGUCAACUAGGUAUCAUAAGUAAACGGAUCCCGGUUGUUCAAUCCUUUGAUAACCAAGGUCAUUCUUUGCUAAAGAGAAAUGAUCACUAUGAGUCAGACUCAAUAGAAUUGGAUCCAUUCCAAAUAGCGAGAAUUAGGAUUCUGGAUCCCUCUCAAUCUCUCUUUCAAUUCGAGGAUCCAGAGAGGUGUUUUCAUAGUCAUCUCCGAAUAUUUGCCAUCUCCGAAUAUUUUCGAUUUCAUUUUUCUAUGAUAUGUCUUUCUAUAUGAAAAUUGGUUAUUUACGAUGUACGAUGAUCCCUGUUAAGCAUCCAUGGCUGAAUGGUUAAAGCGCCCAACUCAUAAUUGGUAAAUUUGCGGGUUCAAUUCCUGCUGGAUGCACGCGAACCGGAACGUUCCAUAAGUCUAUUGGAACUGGCUCUCUAUCCAUGGAAUCUCAUCCAUCAUCCAUACAUAACGAAUUGGUAUGGUAUAUUCAUACCAUAACAUAAGAACAAUAAGAACUCGAAUUCUUAUCGAUACUGGAACUCAGAGCAUAGGAGGGAAAGUCGAUUUAUGGAUGGAAUCAAAUACGCAGUAUUUACAAAAAAAAGUCUUCGUUUAUUGGGAAAGAAUCAAUAUACUUUUAAUGUCGAAUCGGGAUUCACUAAGACAGAAAUAAAGCAUUGGGUCGAACUCUUCUUUGGUGUUAAGGUAGUAGCUGUGAAUAGCCAUCGACUACCCGGAAAGGGUAGAAGAAUGGGCCCUAUUCUAGGACAUACAAUGCAUUACAGACGUAUGAUCAUUACCCUUCAACCGGGUUAUUCUAUUCCACUUCUAGAUAGAGAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.79%
ME_num:
MEP:
26.02%
HE_num:
HEP:
11.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.95
Avg Expression:
48.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.8113673719463 | 3.75823390315636e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.49100254304863 | 2.79291920883589e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.98575075231832 | 0.000159674068080287 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.11207207934655 | 0.034923855338196 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.37132954585316 | 0.00362945686442755 |