RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS112939311

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

19139666

End:

19141473

Strand:

-

Ref_name:

LOC112939311

Sequence
(XR_003242912.1):

UGUCCACGUGGGUCCCAAUCAUCAGCGUGAAUGGAGAACUUGCGAGUGUAGCUCUUGAAGCCAUACCACGGGCCCACCUAGUUGGCAAGCAGUUCCACGUGUCGUGGGGUUGAUCGACGACGUAUUAGUUUGACUAUUUAAAAGCGCAUCACUCUUCAGCACACUGCACGCCACCUUCCAUUCCACUUUUUUUUCCCGAUUUUUCUAUGAAAGCAAUCACACCUUCCAGUUCCACUAUGUUUUGGAGCUAGCUGUUCCCUUGCAUUCCUUCAUCCUGCCUCUUUCCAGCCUGCUUGAAUUUUACAAUUUUCCUGAUAGAACAUGAGGGGAGGCAUGCAAAUUAAGGCCCCGUUCGAAUCUGAUUAUAGGAUGAAAAUUAAGUGUGCACGUAACAAGAGAUAAAUCAUUAGCAUAUGGUUAAUAAAGUUUUAAUUAUUAAAAAUUGAAAAUGGAUUUAUUUGAUUUUUAUAGUAACUUUUAUAUAGAAAGUUUUCACAUGAAAUAUACCAUUUAGCAGUUUAAAAAACGUGCAAACAGAAAUCGAGGAAAAAUCUAGAUGUUGUUGGAGUUUAGAACGGGGAACUUGGCUAUGCACGAUCGAUGCAAGAAGUGAUGGUAUCAUAGACACGGGAAGCGUUGGGAAUUAAUUAGGUGGCCUUGUGGAGUAAGCAGUUUGGACACGAAUUGCCCUCUUUGUUUCUAAUCAUGCGGUGCGGUAAUGAGCGUGACAAAAUCUGCAGGUCCCAACCAUGUGUUACGAUAUAUCUUCAGUACGAGGGAGAUCAAUGUCAACAACAAAUGUAUAGAAAUAGUAACAGAAGAGAUCACAAGGGAGGACGGUAAGGUGCGAGUUGUGCAGGCCAUGACAUAUAAGAUCCACAUGCGUCUCAUACUAACUUAGCUCGCCAUGUCAGCUGAAACUAGGCACAAUAGUUAGCCCGUUAAAUCAGCUAAAACUAGGCAUAAUACUGCUCUCACACCUUGGUACUCUAGUAUUAUAAGACAAGAGACACUUAUAUUUGUUAUUAUGAUUAAGAACAUGAUUCAAACUCGAUCUCAAUAUAAGAGAUCUAAAGUGAACUUAUUCCUUUACUUUUAAGGAAGGAAAGCCUCUUUCCUUGUAAAUUGUUUUCUUUUGACUGUGCGGUUCACAAACUGAAUGGAAAUUGAAUUUUUUUUUUCAAAAAUAUUCUUUGCUAACAAAGUUCCUUAUAAAUUUUAUAGGAACUCUUUGAAUUUUCGGCAGGAUCCGUUCUCGACCCUAGUUCAUCGCUGGAUUCUACUUGAGCCGAGUUUCACAAUCAAAUCCCGCUCCCUGCGGCAGAUAUUCAAGAAAUUGAGGCCAACGCAGAAUAUAUAUGCAAUCUCGAAAGCACAGUAAAACCACAGAUAAUUCGCAAACCAAAGCAUGGCAUGUUCACAUAGUCCAACACAGCACAAUUAUUUGGUUUGGGUAUACUUAAUUACUCUGCAUCUGGCCUGAAUGAUUUUAUUCAUACAACCUGACAGGUUGACAACAUAUAUGCGUAAAUGGCUCACGCCGAUCCAAGGAAACGACCCAUCCAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

430

LEP:

87.4%

ME_num:

61

MEP:

12.4%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.70

Avg Expression:

0.78

Tip: OSA-PHAS112939311 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-2.376465106042870.021642837967184
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-2.004957250041420.0311015133030556
3Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"5.931724137312560.0169569251952581
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.694469103085130.048056297601123