Chr:
Chr6
Start:
12875853
End:
12881118
Strand:
+
Ref_name:
LOC112939263
Sequence
(XR_003242835.1):
UUAGUCUCACCCCUAAUAAAUCGACCCAAUGCACUGUAGUUCAGGUGGGUUGGUUGGGCCUGUUCAACGUGGUGUAGCGUUGAUCAGUAGAGAUUUAAUAUUACCUUAAUUACUUAACAAUUUUACUGUUUUGGUCAAUAAAAUGUUUUACAACCGCCUUUAUGCAUAUAGCCACAAGCCAAUCUUGAAUCCUCUUGCACGUCUGCAUCAUUGGUGUGGCUUGCUGAGUACGGUGGUUGUACUCAGCCUUAUUCCCUUUUUUAUAAGUGCAGUGCUUCUGAGCUGAAGAUGAAGUUAGAAGACCAAGGCUCAGACCCCAGUUGAGUUUUGCCUGUGGAGUGGAGCUGAAGCCCCGCUAGGAUCGCCUUUUUCCGUUGCUGUCGUUCUCUUUCGGUGUGAGGACUAAGUGCCUCUUCUGUGGUGGUCCAUCAGAUCGUGCAUGAUACCAAUCUUUCGUUGGAGGCAAGUGCAUGAUGAACUAAUUGUGUGAUUCAUAGAUUGUUUGCUCUAUCUAUCUAUUUCCGUUAUAUUUCUAUGUGGUAUGUGACUGGUUAUGUUCAGACUGUUGUUAAUGCCAUUUAGAUUUCAAAUUUAUCUUAUGUCACGACAUUAUUCAUGUUUUAUUAUUUCGGAUGUUUUAUUUCUAUUAUUCAAGGACCAUGCGUAGUCAUGGGAGUGCAAUGUGGAUCUUUAUUCAUGUUCCUGUGAGUAAGUGCUGAUCACGCUUACUCGGCUUUGCCAGCAAAUGCUAGGAUGUAUUCACUAUUGUCUGGGAUGGAAACUACUAUUUCAAUUCAGUCCUGCCCGGGAUGGGAACUACUAUCUUCUUUGACUUGGUGUUUGGAAAUGUGUUUCCUAUCAAAGAAAGAAAGCCUUCUGUUCAUGCUUUAUUGUCAAUGAUGUGUAUAUGUGUUUUCUAGUUCCAUAUUGUACUUGCUGAGUAUUUUUAUACUCACUCUUGUGUUUUACUUGGUUUUAGGUAUGCAUUGAGACCGACAUGCAUGGGCGGGAAGUAGCACCCUUAUAUACACAUCUACUUGCACACUAUCAAACUAUAUUGCUUAGGUCCAUAAUGACACUUAAAUUAUAUCCUGGUUUGGUCUUGUAAUAAUCUUUUAGAUUUCUAAUAGUUUCUUUCAUUAUAAGGAUGGAUCGUAUUGUGGGAAUGAUAUUGUUAUUAGUUUAACUUAUAAUUACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.74%
ME_num:
MEP:
15.45%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
1.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.47219516666749 | 0.000822506428077785 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.76094501505365 | 0.00693552694742524 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.85383889366977 | 9.01112921068881e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.23615779690357 | 0.00558147944780156 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.26850355051838 | 0.00427634129825413 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.16026637666517 | 0.000438968416017259 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.95876338542731 | 0.00212754110770938 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.40678469887927 | 4.18173254825534e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.57582663119647 | 0.000501083230886774 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.46668834128381 | 2.94942038262095e-05 |