RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS112938758

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

9118810

End:

9121164

Strand:

-

Ref_name:

LOC112938758

Sequence
(XM_026025085.1):

AAAUGGAGGACUGGUGCCGACAGUUCAUCACGGAAGAAAGAACUCACAGAGCCGGGAUCGCUAACUAAUAGAAUAGUACUACUAACUAAUACUAAUAUAUAGAAAUAGAUAUCUAGAAAUAGAAACGAACUAAUAUAUAGAUAAUCGAAAUUGAAAAGAACUGUCUUUUCUGUAUACUUUCCCCGUUCUAUUGCUACCGCGGGUCUUAUGCAAUCGAUCGGAUCAUAUAGAUAUCCCUUCAACACAACAUAGGUCAUCGAAAGGAUCUCGGACGACUCACCAAAGCACGAAAGCCAGUUAGAAAAUGGAUUCCUAUUUGAAGAGUGCCUAACCGCAUGGAUAAGCUCACAUUAACCCGUCAAUUUUGGAUCCAAUUCGGGAUUUUUCUUGGGAAGUUUCGGGAAGAAAUUGGAAUGGAAUAAUAUAGAUUCAUACAGAGGAAAAGGUUCUCUAUUGAUGCAAACGCUGUACCUAGAGGAUAGGGAUAGAGGAAGAGGGAAAAAUCGAAAUGAAAUAAAUAAAGAAUAAAGCAAAAAAAAAAUAAGUCGAAGAUAGAAGAGCCCAGAUUCCAAAUGAAGAAAUGGAAACUCGAAAAGGAUCCUUCUGAUUCUCAAAGAAUGAGGGGCAAGGGGAUUGAUACCGAGAAAGAUUUCUUCUUAUUAUAAGACGUGAUUUGAUCCGCAUAUGUUUGGUAAAAGAACAAUCUUCUCCUUUAAUCAUAAAUGGAAAGUGUUCAAUUAGAACAUGAAAACGUGACUCAAUUGGUCUUAGUUAGUCUUCGGGACGGAGUGGAAGAAGGGCGGAGACUCUCGAACGAAGAAAAGGAUCCCUUCGAAAGAAUUGAACGAGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGGGACAGGAAGGGUGACUUAUCUGUCGACUUUUCCACUAUCAACCCCAAAAAACCCAACUCUGCCUUACGUAAAGUUGCCAGAGUACGAUUAACCUCUGGAUUUGAAAUCACUGCUUAUAUACCUGGUAUUGGCCAUAAUUUACAAGAACAUUCUGUAGUAUUAGUAAGAGGAGGAAGGGUUAAGGAUUUACCCGGUGUGAGAUAUCGCAUUAUUCGAGGAGCCCUAGAUGCUGUCGCAGUAAAGAAUCGUCAACAAGGGCGUUCUAAAUAUGGGGUCAAAAAGCCAAAAAAAUAAGUGAUUCGUUUUUAGCCCUUAUAAAAAGAAAACGGAUUCUUGAACCUCUUUCACGCUCAUGUCACGUCGAGGUACUGCAGAAAAAAGAACUGCAAAAUCCGAUCCAAUUUUUCGUAAUCGAUUAGUUAACAUGGUGGUUAACCGUAUUAUGAAAGACGGAAAAAAAUCAUUGGCUUAUCAAAUUCUCUAUCGAGCCGUGAAAAAGAUUCAACAAAAGACAGAAACAAAUCCACUAUUGGUUUUACGUCAAGCAAUACGUAGAGUAACUCCCAAUAUAGGAGUAAAAACAAGACGUAAUAAAAAAGGAUCGACGCGGAAAGUUCCGAUUGAAAUAGGAUCUAAACAAGGAAGAGCACUUGCCAUUCGUUGGUUAUUAGAAGCAUCCCAAAAGCGUCCGGGUCGAAAUAUGGCUUUCAAAUUAAGUUCCGAAUUAGUAGAUGCUGCCAAAGGGGGUGGGGGUGCCAUACGCAAAAAGGAAGCGACUCAUAGAAUGGCAGAGGCAAAUAGAGCUCUUGCACAUUUUCGUUAAUCCAUGAACAGAGUCUAGGUAUGUAGACACAUGGAUCCAUACAUCUCGAUCGGAAAAGAAUCAAUAGAAGGAGAAUCGGACGAUAUCUUUCUCGAAACAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

85

LEP:

17.28%

ME_num:

239

MEP:

48.58%

HE_num:

167

HEP:

33.94%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.87

Avg Expression:

115.89

Tip: OSA-PHAS112938758 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.022820826688960.0154028426225507
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.884738959615170.000145679348773696
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.11032194954050.017726022275006
4WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h2.497327444712840.0126166711481878