Chr:
Chr4
Start:
9143866
End:
9147015
Strand:
+
Ref_name:
LOC112938704
Sequence
(XM_026024872.1):
CUCGAGAAAGAGAAUUAACGAAUCCUAAGGCAAAGGGGCGAGAAACUCAAGGCCACCCUUCCUCCGGGCUUUCUUUCCACACUAUUAUGGAUAGUCAAAUAAUGGGAAAAAUUGGAUUCAAUUGUCAACCGGUCCUAUCGAAAAUAGGAUUGACUAUGGAUUCGAGCCAUAGCACAUGGUUUCAUAAAAUCUGUACGAUUUUCCCGAUCUAAAUCGAGCAGGUUUCCAUGAAGAAGAUCUUGUUCAGCAUGUUCUAUUCGAUACUGGUAGGAGAAGAACCCGACUCGGUAUUCUUAAAAAAAGAGGGGAAGCAGAACCAAGUCAAGAUGAUAUGGGUCGCCCCUUCUUCUUGCGCCAAAGAUCUUACCAUUUCCGAAGGAACUGGGGCUACAUUUCUUUUCAAUUUCCAUUCAAGAGUUUCUAUCUGUUUCCACGCCCUUUUUUGAGACCUCGAAACAUGAAAUGGACAAAUUCCUUCUCUUAGGAACACAUACAAGAAAAAGGAUAAUGGUAGCCCUCCCAUUAACUACUUCAUUUUCAUUUAUGAAUUUCAUAGUAAUAGAAAUCCAUGUCCUACCGAGACAGAAUUUCGAACUUGCUAUCCUCUUGCCUAAUAGGCAAAGAUUGACCUCUGUAGAAAGACUGAUUCAUUCGGAUCGAUAUGAGGACCCAACUACGUUGCAUUGCCAGAAUCCAUGUUCCAUAUUUGAAGAGGGUUGACCUCUGUGCUUCUCUCAUGGUACAAUCCUCUUCCUGCUGAGCCCCCUUUCUCCUCGGUCCACAGAGAAAAAAUGGAGGACUGGUGCCGACAGUUCAUCACGGAAGAAAGAACUCACAGAGCCGGGAUCGCUAACUAAUAGAAUAGUACUACUAACUAAUACUAAUAUAUUGAAAUAGAUAUCUAGAAAUAGAAACGAACUAAUAUAUAGAUAAUCGAAAUUGAAAAGAACUGUCUUUUCUGUAUACUUUCCCCGUUCUAUUGCUACCGCGGGUCUUAUGCAAUCGAUCGGAUCAUAUAGAUAUCCCUUCAACACAACAUAGGUCAUCGAAAGGAUCUCGGACGACUCACCAAAGCACGAAAGCCAGUUAGAAAAUGGAUUCCUAUUUGAAGAGUGCCUAACCGCAUGGAUAAGCUCACAUUAACCCGUCAAUUUUGGAUCCAAUUCGGGAUUUUUCUUGGGAAGUUUCGGGAAGAAAUUGGAAUGGAAUAAUAUAGAUUCAUACAGAGGAAAAGGUUCUCUAUUGAUGCAAACGCUGUACCUAGAGGAUAGGGAAGAGGAAGAGGGAAAAAUCGAAAUGAAAUAAAUAAAGAAUAAAGCAAAAAAAAAAUAAGUCGAAGAUAGAAGAGCCCAGAUUCCAAAUGAAGAAAUGGAAACUCGAAAAGGAUCCUUCUGAUUCUCAAAGAAUGAGGGGCAAGGGGAUUGAUACCGAGAAAGAUUUCUUCUUAUUAUAAGACGUGAUUUGAUCCGCAUAUGUUUGGUAAAAGAACAAUCUUCUCCUUUAAUCAUAAAUGGAAAGUGUUCAAUUAGAACAUGAAAACGUGACUCAAUUGGUCUUAGUUAGUCUUCGGGACGGAGUGGAAGAAGGGCGGAGACUCUCGAACGAGGAAAAGGAUCCCUUCGAAAGAAUUGAACGAGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGGGACAGGAAGGGUGACUUAUCUGUCGACUUUUCCACUAUCAACCCCAAAAAACCCAACUCUGCCUUACGUAAAGUUGCCAGAGUACGAUUAACCUCUGGGAUUUGAAAUCACUGGUUAUAUACCUGGUAUUGGCCAUAAUUUACAAGAACAUUCUGUAGUAUUAGUAAGAGGAGGAAGGGUUAAGGAUUUACCCGGUGUGAGAUAUCGCAUUAUUCGAGGAGCCCUAGAUGCUGUCGCAGUAAAGAAUCGUCAACAAGGGCGUUCUAAAUAUGGGGUCAAAAAGCCAAAAAAAUAAGUGAUUCGUUUUUAGCCCUUAUAAAAAGAAAACGGAUUCUUGAACCUCUUUCACGCUCAUGUCACGUCGAGGUACUGCAGAAAAAAGAACUGCAAAAUCCGAUCCAAUUUUUCGUAAUCGAUUAGUUAACAUGGUGGUUAACCGUAUUAUGAAAGACGGAAAAAAAUCAUUGGCUUAUCAAAUUCUCUAUCGAGCCGUGAAAAAGAUUCAACAAAAGACAGAAACAAAUCCACUAUUGGUUUUACAUCAAGCAAUACGUAGAGUAACUCCCAAUAUAGGAGUAAAAACAAGACGUAAUAAAAAAGGAUCGACGCGGAAAGUUCCGAUUGAAAUAGGAUCUAAACAAGGAAGAGCACUUGCCAUUCGUUGGUUAUUAGAAGCAUCCCAAAAGCGUCCGGGUCGAAAUAUGGCUUUCAAAUUAAGUUCCGAAUUAGUAGAUGCUGCCAAAGGGGGUGGGGGUGCCAUACGCAAAAAGGAAGCGACUCAUAGAAUGGCAGAGGCAAAUAGAGCUCUUGCACAUUUUCGUUAAUCCAUGAACAGAAUCUAGGUAUGUAGACACAUGGAUCCAUACAUCUCGAUCGGAAAAGAAUCAAUAGAAGGAGAAUCGGACGAUAUCUUUCUCGAAACAAACAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.25%
ME_num:
MEP:
46.95%
HE_num:
HEP:
24.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.88
Avg Expression:
56.70
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.53543235780201 | 0.00325945892032945 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.83265060359089 | 0.0106764043606379 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.08154422547009 | 0.0428916128801916 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.743328717151 | 0.0399003733971598 |