OSA-PHAS112938574


Function Link


Basic Info

Chr:

Chr4

Start:

10068350

End:

10075881

Strand:

+

Ref_name:

LOC112938574

Sequence
(XR_003241700.1):

AACAAUUCAAAGAUCAUUUCAGUGAUUAAUUUAAUUGGAAAAGUAAUUAAAAUUCCUCUUUUCCUUUUCGGGCCGAAACAGGAAAAGUCCUCUCUCUUUCUUGGCCCAAUCUCCUCUCAGCCUGCAGCCCUCUCCCUCCCUCUGUCGAAGUCUGCUUUGUGUCCCUCUUUCAAUCGGGCCAAGAAGUAGAAGCCCAGCCGAAAAGUCUAAUUUUCGUCCUUUGCACUGUUCAUCUUCAACCUCUGGACAGCCGAACUGAGACCGAGUGGGCUAGGUUUUUCCCAUCCAAAUCCGGCCUUAUCUCUCGUGUAUUCCGAAAAUUAGUUGAGGGGAAAUAUUUCCUUUAUCUUCCUCUCUCGUUUUCCUUAAGAAUCGGAACCUAAUUCCUUGUAUUUUAUCCGAGUCAAACUCGUUUUUGAGUUUACCUCUCCAAACUAACCCUCGGAUUUUCCGGUUAAAAUCCUCUCGUUUUGAGUUCGAUCUCUCUCACCCGUGCCUAUAUAAAGCAUCCCUAAGUCGUCCUCUUCCGUUUGCCUCAAGUUCCGAGCUCUACCGUUGCCCGUAGCGCCGCCACCGCGUAGCCCUAGCCGCCGCCUUCGUUGUCGUCGUUCCAACCGCGUCGCGCUGGGGUUGUGGUCGCCGUCGCCGCUUACCGUCGUCGCCGUCGGGUUCGCGCGGUGGAGGAGCACCUCGGCCGCCCCUUUUCAGCCGCCGAAGACCGUCGGAGCGCCGUCGCCGAGGUUGACCCGAGCCAAGCCGCCGUUGGAGUUCGUCGCCGGCCUUCGUUCGUCGUCGUCCGUCGUUGUUUUUCGCACCGUUUCUAACGUUCCGGAGGAGAGCGUUUACGUUGAGGAAGGUUCAGAAGCGUUUGAGGAAGCUCAAGGCAAGUCACACAGAUCCCAAACAACUCUUUGAGCAUGUUGAACCCGUUUAAAGCUAAUGUUUUAUUUUAACUUAUGCAUUAUUUUCGAAUGUUAUCGGGUGGUGAGCCUUUCCCAUUUAAUUAUGGCCAACAAUGACUUUAUUUUCCUAUGAGUAAUAAAUUGAUUAGCUUGAACCUUAUAUAUUGGUUUGGUUCACCUAAAUGCUAUAUAUAUAAUUGCUUAGCCAUGCUUAGAAACAUUAGCUUAUUUAUGGGAUGAAUCAUAUUACAUUAUUACUUAUGGUUAAUGGUAGCUCACGAUGGUUAAUCGUGUUAUGAUAAUUAAUUGAUAAAUAAAACCUGAUUAAUGGUGGGUUGUGAGCAUGUGAUUUUGAUGGUCGUGCUCAUGGCAAUUAAAGGACCAGUUCGUGAGCUACUGUUGUGAAACAUUAACCGUACCAACCACAAGCCAGCGUGGACAAUGGCUUUACCUUUUGUAUAGCAUGAUUCAUUGCGGGGUGCCAGACUGAGAAGCAGCGAGAAGUUCGUGGGGGUCGCUGGGGAGUCCAUGCCUACCUCUUUAGAAGAGCAAAAAAUUAACUCCGAACCUAAGAGGGGCAUUCGGAUAAUUACCAAACGUAAAUGUCGUAGGCUCUCCGGACCUUCCAUUAUAAUUGAGAGAUGAAAUAAAUAAUUCAAGUCAACAACAAGCAUAAUGAAAUAUCUGACGCCUCGAGAGAGGAAUAUUGGAGAUAUUGCUGGGCCUAUAGCCUGCCAGUCAACUUUAGCCUGAGAUGUGCCCGUCAAACCACUCGAAGGCGGCGACCAGUUGUGUUACACAUUCAGGAGACUUGACAAAAAUGGCUAAAGAUCUACAACAUCUCAAAUAUUCUUAACUCAUACUCAUGUGAAUCUAGUUCCCAGGAUGUACACUAGAUUCACACUUUCAUCUCAAGCAUGGAAAUACAUAGAAAAAUACACUUAAGACGAAAGUGAUUCUAAAUUACAACUACUUCAUAGUUACAUAGGCCGACCAGCCAAAUAAAUAUAUAGAAUAGCGGAAGCUUGACUACCCAAUCCUCAAGCACACCGACUAGGGAUUUACCCCAUUAAGUUCAAGUCCUAGAAGAAGCAGUCGAUUACCCGCAUCACUCAAAGACUAAAUCUAAAAUAUGCAAGCAAAAGGUUAAUUCAACAGCAAGAGUCAGUACAUUAUUAGAAAUAAUGUACUACCAGCAUCACUAAAAAACUAAAUCUAAAACAUGCAAGCAAAAGAUUAAUUUAAUAGCAAGAGUCAGUACAUUAUUAAAAAUAAUGUACUGGCAAGCACCAACACAAGCCUAACACCCUAUUUGCAAGACAUAUAAUCAAGGAAGGCAUAAUAUGUCUCUUUUUAUCAUAAAGCAAGUUUUAUUUGCAUAAAACACAUUCAAAUCAGAUUUUGCUUUCAAAUAAAUUUCAGCAAGCUAGUACUUAGCAUAUGGGCACAUUAAUCAUGUAUAAGUAUGCAGCUCAUUGCUAUCCAUGGCAGCAAGGAGAUCAUUCUCAAAUCUCAUCACAUUUUGAAGUUAAAUUUCAGCAUUUAGAAGAAUAAACAUAAGUCUGCAGAGUUUGUACACUUUCCCCACAAGAUGCGAAAUAAUAAUCAUGCAAGAGCAUGGCACGUGAUACAUAAGUACCCGAUUUAUUACCCGCAACAAAGCUGUUCCAAAAUUCAUGAUUUAGCCUUACACCAGCACGAUACGCGAUACAUAAGUACCCGAUUUAUUACCCGCAACAAAGCUGUUCCAAAAUUCAUGAUUUAGCCUUACACCAGCACGAUACGUGUUACUCCAUCUUAAGCCAUACACGUUAUAUGACCUAGAACCGUUAAGUGGCGGGCCCACGCCUUAAACUUAACGCCGUGGUGGCGGACACAACGGCAACCCACCACGAGGCACAAUACUGUUGUAUCACGUCGGGGUAAAUAGGAAGCUCUUCUGAAUUAUACGAACUCAUAUACACCGGCCUACCAGAAUGUAAGGCUAAAUCAUAAAUAAUUUUCUAAGCUUGGGCUAUCCCGUACUAGCACAUGUGGAUGUGGUUGCACUGUAUACGAAAUGAACUGACAUUGAGUGAAGUCCUUAGGUCGGUUUGGACGCACUCUACCCCUAUCGGUACACAACAAAUCACCAUAUGUGCACCACUUGAGGCCCAAACCUAAAAUCCAUAUUUUGCUCCAUUUUAUUUAUCAAAAUCAUAAGUAUUCAAGUUCUGUCUAGAUUAUUUCAGAAACAAUUUUCAUGUUUGUAAUGAGCCCAUAAUGACAAGGAACACCAUUCUAAGCAUGGCUAAGCAUUAUUGUAACCUAGUGACAUCAAAACUCGUAUAUAUAAAGUGGUAUAUGUCAGGGUUAUGGAUACCACAUACCUAAUAGUAGUUGACUAAAUCUCGGUAGGACCCACCACAUACCAUGUCUUAUAUGGAAACAACCUUCGGAUAUAGGAAGAGUUCCGCGUAAGGAAGGAUGAAUAGAGUUCUACAUGGAAACGACAAGGACUACUCGGAUUGUAUCCAUAUUAGUUUCCCUAGUUCUACUUGGACAAGGAGACACCUAUGGGUAUAAAUACAAGGCCCCCUAGGAGGAGAGAGGACACGGAGCAAUAGAUCAACAUACAAGCCAACAUACGCCAAGACAUGCCGCCGGAUAUCGACUUUAGAGAUAAGCAUGGCUAGUCCCCUACGGUGUCUACAGAUGCUGUCAGGAGAGACAUAGCGCUGUCUUUGAUCUCGCCGGGCACGGAUUCGAGGAGGAAGACUACUCUGUUAUCGACUACGGGAUGGUUUUAUGGCUGUCAAGUCGGCAACAGUUAGAUAGGCUACCCCAAAUAUUGUACUGGUGUGAUCAUGGUGAAUAAGAGCAACGACUGGCUUCGACCGACAAGAGUAGGGUUAUUACCUAACAAUUCAGGGGCCUGAAUCUGUAUAAAAAUCCUCAUCCCCAUUUCUUUUAUUACAAUUUCGCAUAUAUCCUAGUACCAACGAUCCCUAUACUAUGCAAAUACCGGAAUCACGACAUCAAAUACCGGAAUCGCGACAUCAAACGUCGACAGUAUAGUCAUAUUGUUCCUAAGUUUAGGAAUGAUGGAUAUGGAUAUAUGUGGGGUUAAGGUGAUAAUGCAAAUAAUAGGAGUUUGUCUAACAAGUUUAACAAAAUUUUAAUUUAUUACUGUACAAUUGACAUGCAAGAUUUGCAAACAUUUUCAAUAACCUCCAAAACAUAGGUUCAAAGUGAUUAAAGAGAGGGAGGUGGGACUUGCCUUGCAACUGGAAAAUGUCAGCACCUAAAUCACUUCUUCACCGUCUAAGCAAUCAUCUAUACAAAGUACAUGUUAUGCAAUUAAACACCGAAAUAUGCGAAAAAUCCAAAAUGCUUUAAAAUGCAUGAUUUGUGCACAGUGGAUAGGUAUUGGUCUAAGAUGAAUUUAGGUGAAAGAAUUUCUAUUUUAUCUCUUUUUAUUUGGGAGUUAUGAAUUUUAGAAAUUUGCGUGGUAUAAUAUAGGAUUUACUUAGGUACUAUUAUGAAAUGCUAUUGUAAGGUGAUUCUUAUUAAGUUUAUAUUUGCUGGGGUGAAGAUAUGUGUUUUCUAGGACUAACAUAUUUGGUUUCAUAAUUUUUAGAGUUAAUAUGAAUUCUUUAUGUAUUUUACAAGUUAUAACAUGUUAUAGGUGUAUAGUGUUAUAUAGGUUCAUGGCUUUAGAGGUUUAGGUCCAGAACUUGCCUCAUCUAGCCAGUGAUGUAUAAAAUGAGUAUUUUAGUUAACUAAUCUAAUCUUAGUUCAUAAUUUUAGAGUUUAUAUUAUUUUACUACACAUUUUAUAAAUAGGGAUGGUCUAUGUUAGUUACUUAACAUACCAACCUAGAAAUUGUUAUAUGAGUUAAGUUUGCUAAGUCUUUGGGAAUUAAGGCUGGAACUAUGACCUCUCUGGUCUAACAAGUUUUAUUUUGGUUUAUUCAUAGCUAGAGUGCAUUUUAAAUACCUUUACACAUAUAUUUUGCUUAAUCAUUACUAGGUGAUUAACUCCUAGGUUAUCUAUUUAAAGAUUAGAGCUAUAAUCUGUACAGAAGGUGUCAUAUUUUAUUUUACUAUGAUGAAGCUCACUGUUUGCUGGUUCUAUAGAAACUUGGUUCAUUCCAUUUGAAAUAAAAAUGAAUUUCUACAAAUUUUAGAAUUUAAAGGCUGCUCUAUGUUGGUUAUUACUUACAUAAUUUUUUAUAGGCUUUUAUCAUAUAGUAAGUAUAUAAUUUUAUUUUAUAACUUGGAAUUAUAUGUUUUGGUGAUUCUACAGAACUUGUGUUUACUCAAAAAGGACCUAAGAUGAAUUUUAUAUCAAUUUCUAAAUUUCAGCUUAACUUGGAAGUAAUAGUUUUAGAGGCAUUUGAUGUAAAUUGUGUAUAUGUUUUAUUUUACUUUGAUUUUAGAGAACAUGUUGGUGGAUCUGUUGAAGCUAAGUUUGCUCUAAAAUGAGUUGUAAUGAGUUUUCUAUGCAUUUUAUAAUCCUGUGCAUAUUUUAUGUCUGAUUUUUCUUAGAUGAAUUUUAGAGAUAGAUUUUUGUACUUUAUGUGUCACUUCUUAUUUUAUAACAUUAUAGUGCUAAAUUUUGUGAAUCUAUAGAAAUUGGUUUCACCUAAAAAGAGUUUAGAUGAAUUAGUUAGGAGUAUGCAAUUUUGAAGUUUAAAGUAGAUUUGAACAAUUCAGCACAUGUUGAAUAGCUGUUUUCAUUAAGAGUCCUUCCUGUUUUCAAUAAAUAUGAGUAGGUCCUGCAACAGUGCUGUGUGUCCUGUGCUUUUGCAGAAAGGACCCUACAUUAAAUUAAAUUCUUGUAAGGAGGUCCCUGGUUCGAGCUGAAGCAGGACAAGCUAUGGCCGAGCUCGAUCUCAAGCUCGCCGGCGGCAAACGGAGGCUCGGAUGGUGUCGGAAUAAAAAUAAAAAGUGUGUCCCACGUCAAUGCAAUCCUAGAGAAGGUGAAUAUGCUGUAAAUGGUCAACCAUAGCGCCCGUAUGUUGCAGAAUAGUGGAGAAGGUUUUCAGAUGGCUUUGCAUGUUGCGGUGGAACUUGAUUUUGGGCUAAAGGAAUGCAUGCAUUCGAUCUUUGGGAGGUUUAGGGUGCUCACCGGUCAGAAGCACGGUGUUGGCGAGGCUUGGACGGCAGCAGCAGCUCGCGGAACGGCUUGAAGGCGGAGGAUGAUGUCGGCUUCACGGUGACAGCACGGUCCGGUAGAUGGAGAGCUAAGAGAAGGUGUACAGGUGGUUAGAGAGGUCUCAAGGAUGGUGUAUAUGUGAGGAAUCGACACGAGGCUCACCAGAGCAGCGGGAAUUGAAGAUUGACGCCGGCGGCCGGAGUUGAAGAAGAAAGGCUCGAUCUCUUUAACGACGGUGCCUCAGCUCGUUUCCUUCGGUGGUCUUGCUCCUAGGGUCUUGGUGACAAUCAUGGCGCAGUGGCUUAGUCUGAGAUGGCCUGGGUCGACGGGAACGGCGACGCGAACCCGCGGCUGCGCACUGGACACCGGGAGCGACGACGAGCUCGACGCAGGUGUUCGAUCCAUGGAAAAUGAAGAAUAUUGAAUAUGAAAAUAUUAGGUAUGGUGUGUAGAUUACGUUGCCAUGGUUGAAAUGCAGCGAAGCUCACCAGAGAAAUCAAGCAAUGGAUUAAACAUCUUCGGUUGAAAGGAUUGAGGAGGAUGUUCUUGGCUCUACAAUAAAGUUCUUGGUCUAAUUCUUAGUGAAACAUGAUGAGGAAGAAGAGUUGAGUUUGCUGGUGAAAUGGUUGACCAAAUAGUGAUUGUUGUGCUGGCAAGGGAGAGAUAGGUGGCAUGAUAUGGCAUGGACACGAUUUUUAUGAGUUAGAAACUAAUGAGGCUAUGUCCUAACUUGUACUCCAUCCAUGUUUAGCAAGAGAGGCUGCCUAGUGGCCUCAUGUAGAUGUUUCCAGAAGAUUGAAGAGGUAUGGUGAAGUUUUGGGUGUAAUUUGGACAUAACUCUCUCUCUCUCUCUUUCUUUUUUUUUUUAAGUAGAAUUUAGGAUCAAAGAGGUGAUUCGCCAAGGGUGUAUGGCUGAUGAGUGAAUGUCAAGUGGGUCCAUGUAGAUACAUUCUAGGUGAAUGAGAGAGGUAGAGUAGUAGCUUAGGUGUGAUUUGUAUUUUAUCUCCAUCUCUCUCACCUUUAGAAAAAUGAAAAAAAAAUUAAAUAAGAGAGGUGUAGAUGAUGUGUGGCUGUGGUUGUUUGAUGAGUGGGCUCCACAAGGACUUGGUCCCAUAAGUAAGAUAGUGUUGGCACUAUUACA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

324

LEP:

65.85%

ME_num:

166

MEP:

33.74%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.92

Avg Expression:

5.29

Tip: OSA-PHAS112938574 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-6.474073217800762.61745588685533e-124
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-4.827520548042281.40296392559137e-175
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-5.640206734951594.69846470282154e-177
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-5.860540457405641.10649566279988e-78
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-5.601295642214942.69725623247453e-113
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-5.552345988947149.13589742590298e-123
7Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl1.041929223304020.022099341435803
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.147280770265245.31845173328595e-29
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-5.036809863224647.61405105207409e-186
10IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h-2.319995880929670.0288543931713475
11IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h-2.437600114259260.0164620640286406
12IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h-2.131331230319930.0111384952996634
13IR64 // panicle // Dawn--/--IR64 // panicle // Dusk-2.787885964087710.0268510466672937
14Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"3.285274053489874.77113860477862e-26
15Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"4.036555645115561.32870436888979e-73
16Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-5.49205333029843.42293888815743e-176
17Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-6.45631980561868.20685382760635e-179
18Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day1.434182677200892.33395230501648e-06
19Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-5.75225229182953.5079384105639e-137
20Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.692329562522911.29289855930457e-05
21Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-5.395072021434414.57990117045494e-240