Chr:
Chr4
Start:
10068350
End:
10075881
Strand:
+
Ref_name:
LOC112938574
Sequence
(XR_003241700.1):
AACAAUUCAAAGAUCAUUUCAGUGAUUAAUUUAAUUGGAAAAGUAAUUAAAAUUCCUCUUUUCCUUUUCGGGCCGAAACAGGAAAAGUCCUCUCUCUUUCUUGGCCCAAUCUCCUCUCAGCCUGCAGCCCUCUCCCUCCCUCUGUCGAAGUCUGCUUUGUGUCCCUCUUUCAAUCGGGCCAAGAAGUAGAAGCCCAGCCGAAAAGUCUAAUUUUCGUCCUUUGCACUGUUCAUCUUCAACCUCUGGACAGCCGAACUGAGACCGAGUGGGCUAGGUUUUUCCCAUCCAAAUCCGGCCUUAUCUCUCGUGUAUUCCGAAAAUUAGUUGAGGGGAAAUAUUUCCUUUAUCUUCCUCUCUCGUUUUCCUUAAGAAUCGGAACCUAAUUCCUUGUAUUUUAUCCGAGUCAAACUCGUUUUUGAGUUUACCUCUCCAAACUAACCCUCGGAUUUUCCGGUUAAAAUCCUCUCGUUUUGAGUUCGAUCUCUCUCACCCGUGCCUAUAUAAAGCAUCCCUAAGUCGUCCUCUUCCGUUUGCCUCAAGUUCCGAGCUCUACCGUUGCCCGUAGCGCCGCCACCGCGUAGCCCUAGCCGCCGCCUUCGUUGUCGUCGUUCCAACCGCGUCGCGCUGGGGUUGUGGUCGCCGUCGCCGCUUACCGUCGUCGCCGUCGGGUUCGCGCGGUGGAGGAGCACCUCGGCCGCCCCUUUUCAGCCGCCGAAGACCGUCGGAGCGCCGUCGCCGAGGUUGACCCGAGCCAAGCCGCCGUUGGAGUUCGUCGCCGGCCUUCGUUCGUCGUCGUCCGUCGUUGUUUUUCGCACCGUUUCUAACGUUCCGGAGGAGAGCGUUUACGUUGAGGAAGGUUCAGAAGCGUUUGAGGAAGCUCAAGGCAAGUCACACAGAUCCCAAACAACUCUUUGAGCAUGUUGAACCCGUUUAAAGCUAAUGUUUUAUUUUAACUUAUGCAUUAUUUUCGAAUGUUAUCGGGUGGUGAGCCUUUCCCAUUUAAUUAUGGCCAACAAUGACUUUAUUUUCCUAUGAGUAAUAAAUUGAUUAGCUUGAACCUUAUAUAUUGGUUUGGUUCACCUAAAUGCUAUAUAUAUAAUUGCUUAGCCAUGCUUAGAAACAUUAGCUUAUUUAUGGGAUGAAUCAUAUUACAUUAUUACUUAUGGUUAAUGGUAGCUCACGAUGGUUAAUCGUGUUAUGAUAAUUAAUUGAUAAAUAAAACCUGAUUAAUGGUGGGUUGUGAGCAUGUGAUUUUGAUGGUCGUGCUCAUGGCAAUUAAAGGACCAGUUCGUGAGCUACUGUUGUGAAACAUUAACCGUACCAACCACAAGCCAGCGUGGACAAUGGCUUUACCUUUUGUAUAGCAUGAUUCAUUGCGGGGUGCCAGACUGAGAAGCAGCGAGAAGUUCGUGGGGGUCGCUGGGGAGUCCAUGCCUACCUCUUUAGAAGAGCAAAAAAUUAACUCCGAACCUAAGAGGGGCAUUCGGAUAAUUACCAAACGUAAAUGUCGUAGGCUCUCCGGACCUUCCAUUAUAAUUGAGAGAUGAAAUAAAUAAUUCAAGUCAACAACAAGCAUAAUGAAAUAUCUGACGCCUCGAGAGAGGAAUAUUGGAGAUAUUGCUGGGCCUAUAGCCUGCCAGUCAACUUUAGCCUGAGAUGUGCCCGUCAAACCACUCGAAGGCGGCGACCAGUUGUGUUACACAUUCAGGAGACUUGACAAAAAUGGCUAAAGAUCUACAACAUCUCAAAUAUUCUUAACUCAUACUCAUGUGAAUCUAGUUCCCAGGAUGUACACUAGAUUCACACUUUCAUCUCAAGCAUGGAAAUACAUAGAAAAAUACACUUAAGACGAAAGUGAUUCUAAAUUACAACUACUUCAUAGUUACAUAGGCCGACCAGCCAAAUAAAUAUAUAGAAUAGCGGAAGCUUGACUACCCAAUCCUCAAGCACACCGACUAGGGAUUUACCCCAUUAAGUUCAAGUCCUAGAAGAAGCAGUCGAUUACCCGCAUCACUCAAAGACUAAAUCUAAAAUAUGCAAGCAAAAGGUUAAUUCAACAGCAAGAGUCAGUACAUUAUUAGAAAUAAUGUACUACCAGCAUCACUAAAAAACUAAAUCUAAAACAUGCAAGCAAAAGAUUAAUUUAAUAGCAAGAGUCAGUACAUUAUUAAAAAUAAUGUACUGGCAAGCACCAACACAAGCCUAACACCCUAUUUGCAAGACAUAUAAUCAAGGAAGGCAUAAUAUGUCUCUUUUUAUCAUAAAGCAAGUUUUAUUUGCAUAAAACACAUUCAAAUCAGAUUUUGCUUUCAAAUAAAUUUCAGCAAGCUAGUACUUAGCAUAUGGGCACAUUAAUCAUGUAUAAGUAUGCAGCUCAUUGCUAUCCAUGGCAGCAAGGAGAUCAUUCUCAAAUCUCAUCACAUUUUGAAGUUAAAUUUCAGCAUUUAGAAGAAUAAACAUAAGUCUGCAGAGUUUGUACACUUUCCCCACAAGAUGCGAAAUAAUAAUCAUGCAAGAGCAUGGCACGUGAUACAUAAGUACCCGAUUUAUUACCCGCAACAAAGCUGUUCCAAAAUUCAUGAUUUAGCCUUACACCAGCACGAUACGCGAUACAUAAGUACCCGAUUUAUUACCCGCAACAAAGCUGUUCCAAAAUUCAUGAUUUAGCCUUACACCAGCACGAUACGUGUUACUCCAUCUUAAGCCAUACACGUUAUAUGACCUAGAACCGUUAAGUGGCGGGCCCACGCCUUAAACUUAACGCCGUGGUGGCGGACACAACGGCAACCCACCACGAGGCACAAUACUGUUGUAUCACGUCGGGGUAAAUAGGAAGCUCUUCUGAAUUAUACGAACUCAUAUACACCGGCCUACCAGAAUGUAAGGCUAAAUCAUAAAUAAUUUUCUAAGCUUGGGCUAUCCCGUACUAGCACAUGUGGAUGUGGUUGCACUGUAUACGAAAUGAACUGACAUUGAGUGAAGUCCUUAGGUCGGUUUGGACGCACUCUACCCCUAUCGGUACACAACAAAUCACCAUAUGUGCACCACUUGAGGCCCAAACCUAAAAUCCAUAUUUUGCUCCAUUUUAUUUAUCAAAAUCAUAAGUAUUCAAGUUCUGUCUAGAUUAUUUCAGAAACAAUUUUCAUGUUUGUAAUGAGCCCAUAAUGACAAGGAACACCAUUCUAAGCAUGGCUAAGCAUUAUUGUAACCUAGUGACAUCAAAACUCGUAUAUAUAAAGUGGUAUAUGUCAGGGUUAUGGAUACCACAUACCUAAUAGUAGUUGACUAAAUCUCGGUAGGACCCACCACAUACCAUGUCUUAUAUGGAAACAACCUUCGGAUAUAGGAAGAGUUCCGCGUAAGGAAGGAUGAAUAGAGUUCUACAUGGAAACGACAAGGACUACUCGGAUUGUAUCCAUAUUAGUUUCCCUAGUUCUACUUGGACAAGGAGACACCUAUGGGUAUAAAUACAAGGCCCCCUAGGAGGAGAGAGGACACGGAGCAAUAGAUCAACAUACAAGCCAACAUACGCCAAGACAUGCCGCCGGAUAUCGACUUUAGAGAUAAGCAUGGCUAGUCCCCUACGGUGUCUACAGAUGCUGUCAGGAGAGACAUAGCGCUGUCUUUGAUCUCGCCGGGCACGGAUUCGAGGAGGAAGACUACUCUGUUAUCGACUACGGGAUGGUUUUAUGGCUGUCAAGUCGGCAACAGUUAGAUAGGCUACCCCAAAUAUUGUACUGGUGUGAUCAUGGUGAAUAAGAGCAACGACUGGCUUCGACCGACAAGAGUAGGGUUAUUACCUAACAAUUCAGGGGCCUGAAUCUGUAUAAAAAUCCUCAUCCCCAUUUCUUUUAUUACAAUUUCGCAUAUAUCCUAGUACCAACGAUCCCUAUACUAUGCAAAUACCGGAAUCACGACAUCAAAUACCGGAAUCGCGACAUCAAACGUCGACAGUAUAGUCAUAUUGUUCCUAAGUUUAGGAAUGAUGGAUAUGGAUAUAUGUGGGGUUAAGGUGAUAAUGCAAAUAAUAGGAGUUUGUCUAACAAGUUUAACAAAAUUUUAAUUUAUUACUGUACAAUUGACAUGCAAGAUUUGCAAACAUUUUCAAUAACCUCCAAAACAUAGGUUCAAAGUGAUUAAAGAGAGGGAGGUGGGACUUGCCUUGCAACUGGAAAAUGUCAGCACCUAAAUCACUUCUUCACCGUCUAAGCAAUCAUCUAUACAAAGUACAUGUUAUGCAAUUAAACACCGAAAUAUGCGAAAAAUCCAAAAUGCUUUAAAAUGCAUGAUUUGUGCACAGUGGAUAGGUAUUGGUCUAAGAUGAAUUUAGGUGAAAGAAUUUCUAUUUUAUCUCUUUUUAUUUGGGAGUUAUGAAUUUUAGAAAUUUGCGUGGUAUAAUAUAGGAUUUACUUAGGUACUAUUAUGAAAUGCUAUUGUAAGGUGAUUCUUAUUAAGUUUAUAUUUGCUGGGGUGAAGAUAUGUGUUUUCUAGGACUAACAUAUUUGGUUUCAUAAUUUUUAGAGUUAAUAUGAAUUCUUUAUGUAUUUUACAAGUUAUAACAUGUUAUAGGUGUAUAGUGUUAUAUAGGUUCAUGGCUUUAGAGGUUUAGGUCCAGAACUUGCCUCAUCUAGCCAGUGAUGUAUAAAAUGAGUAUUUUAGUUAACUAAUCUAAUCUUAGUUCAUAAUUUUAGAGUUUAUAUUAUUUUACUACACAUUUUAUAAAUAGGGAUGGUCUAUGUUAGUUACUUAACAUACCAACCUAGAAAUUGUUAUAUGAGUUAAGUUUGCUAAGUCUUUGGGAAUUAAGGCUGGAACUAUGACCUCUCUGGUCUAACAAGUUUUAUUUUGGUUUAUUCAUAGCUAGAGUGCAUUUUAAAUACCUUUACACAUAUAUUUUGCUUAAUCAUUACUAGGUGAUUAACUCCUAGGUUAUCUAUUUAAAGAUUAGAGCUAUAAUCUGUACAGAAGGUGUCAUAUUUUAUUUUACUAUGAUGAAGCUCACUGUUUGCUGGUUCUAUAGAAACUUGGUUCAUUCCAUUUGAAAUAAAAAUGAAUUUCUACAAAUUUUAGAAUUUAAAGGCUGCUCUAUGUUGGUUAUUACUUACAUAAUUUUUUAUAGGCUUUUAUCAUAUAGUAAGUAUAUAAUUUUAUUUUAUAACUUGGAAUUAUAUGUUUUGGUGAUUCUACAGAACUUGUGUUUACUCAAAAAGGACCUAAGAUGAAUUUUAUAUCAAUUUCUAAAUUUCAGCUUAACUUGGAAGUAAUAGUUUUAGAGGCAUUUGAUGUAAAUUGUGUAUAUGUUUUAUUUUACUUUGAUUUUAGAGAACAUGUUGGUGGAUCUGUUGAAGCUAAGUUUGCUCUAAAAUGAGUUGUAAUGAGUUUUCUAUGCAUUUUAUAAUCCUGUGCAUAUUUUAUGUCUGAUUUUUCUUAGAUGAAUUUUAGAGAUAGAUUUUUGUACUUUAUGUGUCACUUCUUAUUUUAUAACAUUAUAGUGCUAAAUUUUGUGAAUCUAUAGAAAUUGGUUUCACCUAAAAAGAGUUUAGAUGAAUUAGUUAGGAGUAUGCAAUUUUGAAGUUUAAAGUAGAUUUGAACAAUUCAGCACAUGUUGAAUAGCUGUUUUCAUUAAGAGUCCUUCCUGUUUUCAAUAAAUAUGAGUAGGUCCUGCAACAGUGCUGUGUGUCCUGUGCUUUUGCAGAAAGGACCCUACAUUAAAUUAAAUUCUUGUAAGGAGGUCCCUGGUUCGAGCUGAAGCAGGACAAGCUAUGGCCGAGCUCGAUCUCAAGCUCGCCGGCGGCAAACGGAGGCUCGGAUGGUGUCGGAAUAAAAAUAAAAAGUGUGUCCCACGUCAAUGCAAUCCUAGAGAAGGUGAAUAUGCUGUAAAUGGUCAACCAUAGCGCCCGUAUGUUGCAGAAUAGUGGAGAAGGUUUUCAGAUGGCUUUGCAUGUUGCGGUGGAACUUGAUUUUGGGCUAAAGGAAUGCAUGCAUUCGAUCUUUGGGAGGUUUAGGGUGCUCACCGGUCAGAAGCACGGUGUUGGCGAGGCUUGGACGGCAGCAGCAGCUCGCGGAACGGCUUGAAGGCGGAGGAUGAUGUCGGCUUCACGGUGACAGCACGGUCCGGUAGAUGGAGAGCUAAGAGAAGGUGUACAGGUGGUUAGAGAGGUCUCAAGGAUGGUGUAUAUGUGAGGAAUCGACACGAGGCUCACCAGAGCAGCGGGAAUUGAAGAUUGACGCCGGCGGCCGGAGUUGAAGAAGAAAGGCUCGAUCUCUUUAACGACGGUGCCUCAGCUCGUUUCCUUCGGUGGUCUUGCUCCUAGGGUCUUGGUGACAAUCAUGGCGCAGUGGCUUAGUCUGAGAUGGCCUGGGUCGACGGGAACGGCGACGCGAACCCGCGGCUGCGCACUGGACACCGGGAGCGACGACGAGCUCGACGCAGGUGUUCGAUCCAUGGAAAAUGAAGAAUAUUGAAUAUGAAAAUAUUAGGUAUGGUGUGUAGAUUACGUUGCCAUGGUUGAAAUGCAGCGAAGCUCACCAGAGAAAUCAAGCAAUGGAUUAAACAUCUUCGGUUGAAAGGAUUGAGGAGGAUGUUCUUGGCUCUACAAUAAAGUUCUUGGUCUAAUUCUUAGUGAAACAUGAUGAGGAAGAAGAGUUGAGUUUGCUGGUGAAAUGGUUGACCAAAUAGUGAUUGUUGUGCUGGCAAGGGAGAGAUAGGUGGCAUGAUAUGGCAUGGACACGAUUUUUAUGAGUUAGAAACUAAUGAGGCUAUGUCCUAACUUGUACUCCAUCCAUGUUUAGCAAGAGAGGCUGCCUAGUGGCCUCAUGUAGAUGUUUCCAGAAGAUUGAAGAGGUAUGGUGAAGUUUUGGGUGUAAUUUGGACAUAACUCUCUCUCUCUCUCUUUCUUUUUUUUUUUAAGUAGAAUUUAGGAUCAAAGAGGUGAUUCGCCAAGGGUGUAUGGCUGAUGAGUGAAUGUCAAGUGGGUCCAUGUAGAUACAUUCUAGGUGAAUGAGAGAGGUAGAGUAGUAGCUUAGGUGUGAUUUGUAUUUUAUCUCCAUCUCUCUCACCUUUAGAAAAAUGAAAAAAAAAUUAAAUAAGAGAGGUGUAGAUGAUGUGUGGCUGUGGUUGUUUGAUGAGUGGGCUCCACAAGGACUUGGUCCCAUAAGUAAGAUAGUGUUGGCACUAUUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
65.85%
ME_num:
MEP:
33.74%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.92
Avg Expression:
5.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.47407321780076 | 2.61745588685533e-124 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.82752054804228 | 1.40296392559137e-175 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.64020673495159 | 4.69846470282154e-177 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.86054045740564 | 1.10649566279988e-78 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.60129564221494 | 2.69725623247453e-113 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.55234598894714 | 9.13589742590298e-123 |
7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.04192922330402 | 0.022099341435803 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.14728077026524 | 5.31845173328595e-29 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.03680986322464 | 7.61405105207409e-186 |
10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.31999588092967 | 0.0288543931713475 |
11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.43760011425926 | 0.0164620640286406 |
12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.13133123031993 | 0.0111384952996634 |
13 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.78788596408771 | 0.0268510466672937 |
14 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.28527405348987 | 4.77113860477862e-26 |
15 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.03655564511556 | 1.32870436888979e-73 |
16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.4920533302984 | 3.42293888815743e-176 |
17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.4563198056186 | 8.20685382760635e-179 |
18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.43418267720089 | 2.33395230501648e-06 |
19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.7522522918295 | 3.5079384105639e-137 |
20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.69232956252291 | 1.29289855930457e-05 |
21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.39507202143441 | 4.57990117045494e-240 |