Chr:
Chr3
Start:
27554706
End:
27561651
Strand:
+
Ref_name:
LOC112938222
Sequence
(XR_003241281.1):
AGUAAAAAGUGGAGUAAGCAGGAAGAAAGUAGCUGGCGAACAUGAACAUCUAUGAGGAUCUUUGUAGCACCUACCUCUUGUCACUACUCUUCUUCCUAUGCAUGUUGUCAUAUAAACCUCCAAAUGCAGAACAGAUGAAACAAUAAUAUUGGCCAGAGGACACACAUCACAUAUAAGGAAAAAAAAAGAGUACUGCAUAUAUAAUAAGUCUACAUAGGUAUGAGAGGUAUCAGGAACAGUGUUAUCAGGCGAACCUUCUGCACAAGUUAGCCGUGCUAUGAUAUUAGUUCUAGUCAUGAAAAAUCUUCUCUCUUUAUAUAACAAAUAACUAAACCUGAAUUUUAGUUGUGUCCGAAUCCGUCUUUUGUGCAUAUGAUGCUUUUUCAGGUAUGCGAGAGGAACUAGGCCCUGUUUGGAAGAUUGCCCAUGGCUAAUUUUGAGAACUAAUGUUUAGUCAUGAAUUGGUAGGCUAAAUAUUAGCCUAAGAUGAUAUGUUUGGAUCCAUGAGCUAAUUUAAGGCUAAAAGGUGGAGAAAGAGUAGAAAGAGAGGAGAGAGAGGGAGAGAUAGGGCUGCUUUUUGAUGGUCUCCACAGAAAAUUAGCCCCAUUAGCACCCCUUAGAGGGGCUAAUGUUCUGAGAGGGGCUAAUUCACUCUACCCCCAAAUUAAACCACCUGUUUGGAUCCUUGAGGGCUAAUUCAGAGCUAAAAGGUGGGGGCUAAUAAUUAGCUCAUGGAACCAAACAGGACCCUAGAAUGAACAUGGCGAGAAUGAAGUGUAGAUUCCUUGAAUGCAGAAGAAUACAAAUUACAGCAAUGGAGAAUAAUAAACUGGUAAAAGGCAAAUGAUGGGAGCGGGAGCAUUUGUGAAUUGGGAAAGCCAUCCAAAAUAACAUACUAUAUGCUAGCAUUGGAGAGUCCAUCUUGUGUCUCACGCGAUCUCCAUUUCUUAGAUCCUUGAAGAGUGUGAGGAUAGGAAGCAUCAGGAAAAAGAAAUCUCCAUUGCUAUUGCUUGGUGGGUGUAGCAGCAACAAGCCUACAUUGGGCAGUAACCAUGGUUCUAGAAAUUAAUUGAUCAUUUCCAUUUUCCACCAUGGUUCUUUAGUCAGCUUGCUGUGCAUCUACAUUGGGCAGUAACCAUUUACAUUAGCAAGCAAUUACAGCGCCUACUUCUACUCUGCUACUAUAAUCCUGAGUAAGACAACAUAAUUGUCUAGGACUGACAUCGAUAAUGGCCUCUUCAUUGUUCUCACGUUAUCACUACUAGUAUGAAAAAAAAGGAGCUAGCAUGAAGAAAAUCGCUAUUGCACAUCUGUGAGGAUCUUUAUAACACCGACCUUUCACUACUCAUCUUCCUAACAUUAGUGUAUGAAAAUUGGCGUAAACCGUUGAGACUAGCCACUAGCGUCUGUCACUUCCGUUCUUCCUCUUUAGUCCAAAUGGGAAUAGGAGGUAUCAGGAUAAGCGUAGCCAAACCGUUCUUCCAAUAAAGUAAGCAGUGCUUAUGAUAUUAGUCCUUAUCUCUGAAAAUCUUGUGUUUCUUGCUGUAACAAAUAACUAAGGCUGAACUUUAGCAAGCUGGUUCAAUACCCUCUUUCAUAGAGUUACAUUACUUAUAUAUAAUGUCUUUUCAGGUGUGCGAGAUAAACUAGAAGAACAAACAUGGGGAGAAUGGAGUGUUGCGGCUCUUCUACCUAUGAGGAUUGAAGUUAUGUGACUCCUCGCAUCUUGAAGAAGAACGGCACGGAUACACUUCCCUGCAGCUAAAGAUCAUUUUCCGCUUACAUAGGUUUGCAAGGUCCUUCAGCCCUACGUAGGUUUUGUGUGUCAGAUGAUCAAUGACAGAUUGACACACACCAACCUGAUCUUCAUUGCUGCAUCGAUCUUCAAAUAUUCGGUGCAUAAUUAUCUAGAUGUAUAGAAUAGAUGAAGAACCAGCAAAAGAUAGAAAGACAAAAGAUGAAAGGAAAUAAAAUGUUUUUGCUUCUGUGAAAGCCAUCCGAUUAAUAUAUACGCUAGCAUUGGAGAGCCCAUCUUGUUUGGUCAUGAGAUGUCCAUUUCUCAGCUAUCUCUUAGAGCGCGAGGAUGUUAAGCAUCAGGAGAAAGAGAUUGAGAGAUCGAAAUGAUAAGUAAGAGAAAUACCGUGUUUUUUUUACUCUCAGAAAUCCAUUAUAUCUGAAAACAAACUUUUUUAUGAACAAAGUAGAGACCAACUUCAGAAUUGUACAUCCUUAGAAUAAGUUAUCUCUGUGCAUCCACAUUUUCAGGGAUAUGAAAGAAACAGAGUAAAACGUACCCACGAAGUGAGAUUGAAGUAAUGCUCUGUAGGACAGAGAUGGUUAAUGUUACCCAUUCUCUCCAUUUUUUUUCCCAUCAACGAAUGCUUAUUAUGAGAAUAAGCAUGUAACUGGACUGCCAAUGGACUUCCUGCUGGAUGUAGCAAGGCUGUGAUUCUGUUUAGACUUAGUUCUUAUCCCCUAAUACAAUGACGAUAUAUUGUUCUUUCUCAAUUUGCUGUGCAAGUGUGCAUGCAGGGUUUUCAAUUUCGAUUUGUCGAAAAUUUCGGUAAGACCAAAAUUUAUGAAAUUUCGUGAUUUUCGGUACUUUUUGGACUGAUUUUUUUUUGAAAUUCUAACAAAUUUUUACUGGAGUUGAAUAAACUUUGACCAAAUUCAACAAAAAAUUGAUAAAAUACGAAAAUUUCAGUUAAUAUAUUGAUUACCAAAAUUUCAGAAAUUUUGAACUAAAAUUGCAAUUCCCUGUGUGCGUGUAGAUUCGAUAUUUACAUCAACAAGAAAUCAUAGCACCUACUUCUACCCUGCUCCUACUAUCAUCCUGAGUAAUAUAACCUAGUACUACUUGUCUAUGAGACUGACAUCUAUAAGGGCCUCCUCUUGGAGUAAUGCAAAUGAAAAAAAAUGGAGCAAUCAUGAGGAAAGUAACUGGAUGACAUCUAUCAGGGUUUAUUUUUAUAGCACCUACCACUUGUAACUACUCAUCUUCCUACGCAUGUUUGUCACAUAAACCUCCAAAUGCAUAAUGCAGGGAAUGGUAUAGAGAAUAUAGGACAGUAGGACACACAUCGCAUAUGAAGAAAGCAUACUAGUAUACUAGCAUCCUAUGUCAUUCCAUUCUCACAUUUCGUCCAACAUGGGUAUAGGAGGUAUUGCGAAAAACACAGGCAGGCUAACCUUCCACACAAGCAAACAAAUCCCUCUUUUUAGUAGAAUUACGUCGUGUAUAACUUUUCUCAGGUAUUCGAGAGAAACUAGGAUGAACUUAUUGAGAAUGAAGUGUUGCAACUAUUUUAGCACCUACUACUUUAGUCAUUUUAUAGAGCAGAUAUGUGACUCCUGAAUCCUAUGUUGAAGAAAAGCAAUGAAAAUGAGCGGUUCCACUUGUUGAAGACGUUCCCUAUACAUAUAUUGAUACUUGGCUGAGGACCUUCAGCAGUGACCCUCUACUUGUCUUACACUUUAAUCUGAUGAAUGAUGAUCAAUGCAACACCAACCUGUUCUUCAUUGUUGUGUCUCCUCAUCUUUGAUACAUAAACAUCAAGUUGUAGAUAACAAAUGGAGAGCGAACACGAGAUAAAAACCAAAUAAUAAAGGAAAAGUGAGCAUUUGUUAUCUCACGAAUAACAUAGAUGCUAGCAUUGGAGAGUUUAUCUUGCAUCUCAUGAGAUGUCCAUUUCUCAAGAGAUAUCUGAGCUUGAGGAUGGGAAGCAUCAGGAGAAAGAAAUCCAGAGGUACCCAUAGAAGAAGUAACACAUAUACCUAUAGUAUAUGUAUAUGUUACUUAUUAUACCUAUAGUAUAUGUUACAAGACAAAUUAGUAUGUCCCAUAACAACUUUUGAUGAACAAAAACAAGAGAAAGACUUCAGAGUAUUACAUCUUUGUAACAGGUUCUCUCUAAGCACAUCCACAUUUUCAGGGAUAUGAUUGAAACAUAGUAUAACACUCGGAAGGAUCUAGUUGAAUGGACAUGAGACAAAACAACUGUUGUGUCAAGCGAGCGUGCUAGGCAAGGAGAAUGUGAUCAUUGUAAAAAAAAUUUGAAGAAAAGAUCAUUGUACAGAAUGAGAUAAUCAGAAACAUCAUGCACCAACGAUUGGUAAUAGUAGCAGGCUGAAGAUGUCGCUGGUAUGGUGGCGGAGCAGUAGGCAGCCAUGAGAGCUGCUGCAUGCCAAUGCCAACAAGUGCAUCAUUGAUACAAUAAAGUCUGGUUGUUUGGGGUUUUGUUUUGUUGAAUGGGCUGUAGUUUUUUUAUGCAUCGAGGUGUUUUCAAUAUAUAGCUUAGGGGAAAUCAUCAUGAUUCGAAUUUCAUUGAUUUGUUGCAGAAAAUUUAUAAAACUUGCUGAACUUUGCAGAGGCCUGAUAAAGCAUUCAUGACAACUUGGUGAAACAUUCAUUUGACAUGGUUAUACUUAUGAUAUGCCACGAAUGAUCAAUGAAACUUUUAGAGAUACUGACAAUACACCUGAUGAAACUCUGAAGAUAAAACUAGCAUGCACGCAUGUAUCAUGUAAGCUAAAGGUGCUUUACAAUGGUUUUUGUUAGUAGAAUUAAUCUAGAGCCCUCAUAUUUUCUAAUCUAAGGAUCAGAUCUAUUUCUAUUACUACCUCAACUAUUUGCAGUAGAAUAUUUCUUUUGCUGGUAGUGGAACUCAUAAAUCAAUGGUCAAGGUUACUUCUAUUGGUGACAAUAUUGCUAGUAGAAUACCACCAAUAAAGACCACCAUAAAAAAAUCACAUCUAUUUAUACUUCCACCUAACCUACUGGCAGUAGAAUUCAUAACUCAAGACUUAAAUCACUUCUACCACUGAUAAUAAUAUUGGUAGUAUUUAGUAAAGGCUAUCGCAGGUACUUGAGUAAUAACACCUACUUAUAUGUUAGACUGACAUCUAUGAUGGCCUCUUCAUGACUCUUACGUUAUCGGAUCUUUAACUUGUUGACUUAUUAGUAUAAUAUAUACAUGAAAAGAAAUUAUGGAGCAAGCAUGAAUGAAGCAAGUAAUUAUGUGGAUGGACAUCUACAAGGAUUUAUUACAACACCUACAUCUAUAAGGAUUUACAUUAUCUUCCUAUGCAUGUUUGUCAUACAAACCUCCAAAUGCAGAGAGGAAGAAACAGUAGACACACAUCACUUGUGAAGAGAAUAUUAUAGUAUACUUGUUCUAGGAGCAUCAUAUUGUUAUACGGAAGUCACUUCCAUUUUCCCAUUUAGUCCACAUGAGCAUAGGAGGUAUCAGGAAAAGGGUACCCAACCAAGACUUCUGCCCAAGUAUGUGAGAGAAACCAGAACGAACAUGCAUGGCUGGAGAGGUGGAGAACGAAGCAUUGUGCUGUUUUAGUUGCUCUUGCUUGAGUACCAUGAACAAAAGAUAUGUGACUUCUCAGAAUGCUUCAGGAUGUUGGAGAAGAGGCGUGAGUAUGCUCUUCUGCUUCUGCACGGGUAAACUAAAGAUCCAUUAUUUGCGUCGGUUGGACGAUGCCCUUCAACAGUGAUACAUGCCAUGAUGCUUUAAUUGUUAAUCCAGACAUGUGUGUGAUGAUCAAAGGCACACUAACAUGUUCUUCGUUGUGUGUUUUGCCAUCUCUCGCACAAUGUAUGAGCAGAUGAAGAACGAAUACAAGAUAAAAGACAAACAAUGAAAAGAAAGAGAGAAUUUCUACUUAAGCCAUUUGAGUUGUCAAAUUUUCAAGAAUUUUUCAUGAUUAAAGUGACAUGCAAAAAAAAGGGGCAUCCCCUUUAAAGGGUAAAAUGACUUUCCCAAAUAAUUAAGGGGAUCAAUGCCACGCCAACCUAUUAUUUCAUCACUGUGUCCAUCUUUGAUACAUAGACAUACGAAUGAAACGGAAAAGGUCAAGAAUGAACAAGAGAUAAAAGGCAAAUAGUGGAAGGGAGUGUACAUUUGUGGUUUCAUGAAAAUAAUUUUUUCAUUCGGGUAAUGUAUAUAUAUGCUAGAGUAAUUCUAGCACUGUAGAGUCCAUCUUUUGUCUCAUGAGUUGUCCAUUUCUCAGAGAUCUAUAGAAGCGUAAGGAUGGGAAGCGUCAGGAGAAAGAAAAUGAGAAACACCCAUAUACCAUGUAAGACAUCCCAAUACCUAUAAUGUUUAUUACUUACAGAAAUUCAGUAGGUACCAUAACAUUUUUAUGAACAAACUAGAACGACUUCAUAAUUUUACAUACACCGAUACACUUUUUCAGGGAUAUGAAGUAGAGUAAAACGCAUAACGGAUGGAUAUGAUACAAUUGACAAGAGACAAAGCAGGCACUGCACAAAGCAAGAAAGGCAAUGGCAAUGUGAUCUCUCUCUAUAGGAUGAUAGAACCAGAUAUACCAUGCAUCGAUAAGUACUAGUAGAGUAGCAGGCUGCAGGCGCAGGUGGUGUGGGGUUGGAGUAGGUUCAUUUGAGAGAUCAAGUGUACUUGUCAACCAGUUUAUAGAUUUUUUUUUUGCGGAUGAAUUGUAUAUGUUUUCUGCCAAGUGUUGAGGUGGACUCAAUAUAUAACUCAUGGGAAAUCGACUUGUCAUAGGGCGGCUUGCUUUAACUUUUGUUCAUUUGGUUGCUGAAAUUUGAACAAGACUAACAUGGAAGUAGUUGAAACAUGCAUGAGAGACAUGCAUGGUGAAAUAUUCAUAUGACACAAUGAUAUUGAAGAGAUGCCAAGAACGCUCAAUAGAACUUUUGAGAGGCACCGACAAUACCUGAUGAAACCCUAAUUGAGUGGCAUGUUUGUAUACCACUAUACUGUAACUAUCGUAUGUAUUUCUUCCAUUUCAUAUUAUAAGAAGUUUUGGGUUGUCUUGAAGUCAAACUUCUUUUAAUUUUGACCAAGUUUGUAAAAAAAAAAACCUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
98.58%
ME_num:
MEP:
1.22%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.97
Avg Expression:
0.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.45941402196863 | 0.00987415053020854 |
2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 7.76259647631048 | 3.72734878521481e-05 |
3 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 5.61391212819365 | 0.0384535648169393 |