Chr:
Chr3
Start:
26836646
End:
26839851
Strand:
-
Ref_name:
LOC112938208
Sequence
(XR_003241247.1):
UGGAGAAACAAAGUCACGCGUAUAUAAAAUGUACUUUUGUAAAAUUUAAGAGUAACGAGCUCUAAAUAUUUUGUUCAAAACAUUUUGGUAUUCUUGAACCCUUGUAGCCUUCUAGUUUUGCAGUGAUCAUGGCAACACAUAUUUUCAGCGGCACUGAAUGAUUUUUUUUUUGAAUAAAUCGAAGAGCAUCAAUUUCAUUGAAUGGAGCAGGAAACGGCACUGAAAUAUCAAGAACACUGGAACUUUUUUUGGUGCUGGUACCCUGGUUGAGAUUCCACAUGCUUCCCAUUUCUACAGCCACUUGAGUAAUAGUAUGGGUCCUCUCUUCCUCUUCUUAUUUUCAUUCCCAAAUAUGGAGUGAAGGAAAAUAGCAAGGAACUGAGCAGCUUGCCGGUAUAUAUGAUAUUGAUAUAUAUAACUCACCAUGCAUCAUGUAGGUAGUGAUAGCCAUAGACUAUAAAUGACAUACCAACAAGAAACAUAAAGAGCAUUCCCAAAUCAGGAACACACAUGACAUGAUUUUGAUGGUUAGCACUUAACUUUGUAGUAAGCAUAGUUAACAGUAACCAAGUUAUGUAAUGUCGUUGGGCUAGACUAUGAGGCUAGUGGGCCUGUUCGUCUGCCUGUGCUGCGGCUGCGGUGCAGCCGGCACCAACGGUGCCACACACACAUGGCGCAGCCGCAGCCGCCGCAGAUAGACAGCCGAAUAGGCCCAGUAUUUGUUAUCUUAAAAAUAAAUAAAAGAAGAUAGGUGCUACGGAGUUGUGUUGCUUUGGAUAGACGUGUGAUAGUGCGAGCCUAGCUUUGCCUUGCUAGUUUUCCGGCAGCUGGUAGGUCUUGCCUUCGUUACAACUUGACUAUGAAGUCAUACAACCAGCGGUGGAGCGAGGCCCAGCAAAUCCUAGGUUGAUGCGACACUGCUCAAGCGGGUGGUAGAAUAUGCAAGCCCCUUUCAACGCAAGAAGUAGAAGGUGAGGGCUUCGUUCUUGAUGCCAGUGCAAUCGAUACUCCUGGUCCAUGGCUGUAGCAAUUUACCACACAAUGUUGCAAAUCCUACACCUACAACUACCCGUUCUGCAUUGGAAUUAUUCCCGAAGCCUUCCAUUCUCAUGCUCGUCGAAGAAUUUGACUUUCAUACUAGUGGGAAGAGAAGGAGAAGAACAAUCAAAAGGGCUAGGUAAUAUUUCACAGGAUGUCUGGAGUGAGAACCGUAUAUAUAAUACAACACAACCCAUCUGCAGUAUAGUAUGUCUAUAUAUAUCCUACUACAUUUUCUCACUUAUGUAAUGUGCUAAUUAAAGAUGUGUUGUUGGUGUUGCCUUAUAUCUUCCACUCUGUAGAGCCAAGAUUAUCCCCGUUUACUUCUUUUAUUGUACAAAAGUAACUGCAUCAUUGUACAAAAGUAACUGCAUCGUUUGGUUCUUGCCAGUCCUCGAGGUGGUACCAUUCGCUUGGCCAGCUCUUGCCACUCCUUCUAGCGAGACAACUAUAUUUCCGUGUUUUUGUUUUUAAAAAGGGUAUAUUCUUGCAAAACACGUGAGAAAAUAAUAUAUUUUCAGAAAAAAAAAAGUGCUACAUACCAAACAUCCAUGUAUGAUGCAUGAGUAAAAUUUUACUCCCUGUGUGUUUGUAAAACUGAAUAUAUCCACAAGUACAGUUUGACUAAGACAUGAUAUACUACAGCAUAAUAGCACACGAUACAUGUGGUUUAGCACUAUGUACCAUGCAUUUAACGCUUGCUUCUAGGAAAGUACUACAAGACCAUUCACUCCGAGCAAGUGUACCAAUUUACUAUUUAGCUAACAAGCUAGUUUCAAACAAAUUAAUAGAGCUAAAUCAAGUAAGAAAAUUCUAUAAAGUUUUUAUAUUCCAAGUAAGGACCUCUAAGAAUUCUCAAGUUUUGAAUGGAGCACAAUCAACCAGUGACCCUAUGUCACGGAAGAUGGCACGCCAUGUUCCAACCUUUGACUGUGGCUCCAAUCAAUAAUGCAGUUAGUGGUUCCAAUCAAUUCCUCAGUCAACAAACCAGUUUCAGGAAGGAGAAGAGGGCGCCAAGUAGCUUCUUGAUUCCAGUCUUAUCAAUGCUAUGGCUAUUCACUAAAGAAUGAUGCAAAGCCUAUAUAUACAACUAUCCAACCAGCACUGAAACCAUUCCCAAAGCCUUCCAUUCUCAUGUUCGUCAGAGAACUAGAAUUUCAAAAUUAGUGGGAAGAGAAGGAUAAGAUCAUAACAACCAAAAGGGCUAGGUAAUAUUUGAUAGGAUGUAUGGAGUGAGCAACAUGUACGGGAGAUGACAUCCUAGUGUACUUGGGGAAGAAAGUUCAAUGGCACAGGAAGUCGUCCGACACUAAGGAGCGGUAGGGACAAAUUGGUGCCCCUCGUGCCGUUGAAUGAGAGGGAAAUCUCCAUCGAAGCUGAACAGAAGUGAGAAAUGGCUGCCGCUCUGACCUCCAUGUUUGCUAGCUCUUAGCUGCGGUCACACUGAACAAGAUCGAGGAAGAGAUCAAGGAGCUUGCCAUUAAGAUUGAUUAGUAUCCAAUAGGCAUCACAAUUGGAGAAUCCAAUAUUACAAAAUUUUCUUCCAUGUUUAAUGCUUGUAAUUCUGUUGAGAUUCCACAUGCCUCCUAUUUCCCAUUGGCCACGUUGAGAAAUAGUACUCUGUGUUAUCUUCCACUACCUAAGCAAUGAGUACAACUAUACACAAGAUGAUAUAAAUGUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.92%
ME_num:
MEP:
4.88%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.91
Avg Expression:
0.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.57397749183733 | 0.00538219408627505 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.06086975152499 | 0.000374367666708777 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.28780444493226 | 0.00762059964026485 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 5.61785986506611 | 0.00162610749487666 |
| 5 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 3.93521404531145 | 0.000120746403380613 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.95323327568468 | 0.00859837674044651 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.73741809036685 | 0.0143665753184017 |
| 8 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.83627927774247 | 0.000699775858031092 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.88677731250628 | 0.000606422479133794 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.9554406973728 | 0.00672610716695943 |