RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS112937968

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

14241446

End:

14244459

Strand:

-

Ref_name:

LOC112937968

Sequence
(XM_026023455.1):

AAUUGAAAAGAACUGUCUUUUCUAUAUACUUUCCCCGUUCUAUUGCUACCGCGGGUCUUAUGCAAUCGAUCGGAUCAUAUAGAUAUCCCUUCAACACAACAUAGGUCAUCGAAAGGAUCUCGGACGACUCACCAAAGCACGAAAGCCAGUUAGAAAAUGGAUUCCUAUUUGAAGAGUGCCUAACCGCAUGGAUAAGCUCACAUUAACCCGUCAAUUUUGGAUCCAAUUCGGGAUUUUUCUUGGGAAGUUUCGGGAAGAAAUUGGAAUGGAAUAAUAUAGAUUCAUACAGAGGAAAAGGUUCUCUAUUGAUGCAAACGCUGUACCUAGAGGAUAGGGAUAGAGGAAGAGGGAAAAAUCGAAAUGAAAUAAAUAAAGAAUAAAGCAAAAAAAAAUAAGUCGAAGAUAGAAGAGCCCAGAUUCCAAAUGAAGAAAUGGAAACUCGAAAAGGAUCCUUCUGAUUCUCAAAGAAUGAGGGGCAAGGGGAUUGAUACCGAGAAAGAUUUCUUCUUAUUAUAAGACGUGAUUUGAUCCGCAUAUGUUUGGUAAAAGAACAAUCUUCUCCUUUAAUCAUAAAUGGAAAGUGUUCAAUUAGAACAUGAAAACGUGACUCAAUUGGUCUUAGUUAGUCUUCGGGAUGGAGUGGAAGAAGGGCGGAGACUCUCGAACGAGGAAAAGGAUCCCUUCGAAAGAAUUGAACGAGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGGGACAGGAAGGGUGACUUAUCUGUCGACUUUUCCACUAUCAACCCCAAAAAACCCAACUCUGCCUUACGUAAAGUUGCCAGAGUACGAUUAACUUCUGGAUUUCAAAUCACUACUUAUAUACCUGGUAUUGGCCAUAAUUUACAAGAACAUUCUGUAGUAUUAGUAAGAGGAGGAAGGGUUAAGGAUUUACCCGGUGUGAGAUAUCGCAUUAUUCGAGGAGCCCUAGAUGCUGUCGCAGUAAAGAAUCGUCAACAAGGGCGUUCUAAAUAUGGGGUCAAAAAGCCAAAAAAAUAAGUGAUUCGUUUUUAGCCCUUAUAAAAAGAAAACGGAUUCUUGAACCUCUUUCACGCUCAUGUCACGUCGAGGUACUGCAGAAAAAAGAACUGCAAAAUCUGAUCCAAUUUUUCGUAAUCGAUUAGUUAACAUGGUGGUUAACCGUAUUAUGAAAGACGGAAAAAAAUCAUUGGCUUAUCAAAUUCUCUAUCGAGCCGUGAAAAAGAUUCAACAAAAGACAGAAACAAAUCCACUAUUGGUUUUACGUCAAGCAAUACGUAGAGUAACUCCCAAUAUAGGAGUAAAAACAAGACGUAAUAAAAAAGGAUCGACGCGGAAAGUUCCGAUUGAAAUAGGAUCUAAACAAGGAAGAGCACUUGCCAUUCGUUGGUUAUUAGAAGCAUCCCAAAAGCGUCCGGGUCGAAAUAUGGCUUUCAAAUUAAGUUCCGAAUUAGUAGAUGCUGCCAAUGGGGGUGGGGGUGCCAUACGCAAAAAGGAAGCGACUCACAGAAUGGCAGAGGCAAAUAGAGCUCUUGCACAUUUUCGUUAAUCCAUGAACAGAAUCUAGGUAUGUAGACACAUGGAUCCAUACAUCUCGAUCGGAAAAGAAUCAAUAGAAGGAGAAUCGGACGAUAUCUUUCUCGAAACAAACAAAAAGGAAAAGAAAGAGAAAACAGAAAUCAUGAUCAACUAAGCCCUCUCGGGGGCUUGCUUAAGAAUAAGAAAGAGGAAUCUUAUGGAAAUAGCAUGGAAUAAGGUUUGAUCCUAUUCAUGGGGAUUCCGUAAAUAUCCCAUUCCAAAAAUCGAAACAAUCGGGACUUUUCGGAGAUUGGAUGCAGUUACUAAUUCAUGAUCUGGCAUGUACAGAAUGAAAACUUCAUUCUCGAUUCUACGAGAAUUUUUAUGAAAGCGUUUCAUUUGCUUCUCUUCCAGGGAAGUUUCAUUUUCCCAGAAUGUAUCCUAAUUUUUGGCCUAAUUCUUCUUCUGAUGAUCGAUUUAACCUCUGAUCAAAAAGAUAGACCUUGGUUUUAUUUCAUCUCUUCAACAAGUUUAGUAAUAAGCAUAACGGCCCUAUUGUUCCGAUGGAGAGAAGAACCUAUAAUUAGCUUUUCGGGAAAUUUCCAAACGAACAAUUUCAACGAAAUCUUUCAAUUUCUUAUUUUAUUAUGUUCAACUUUAUGUAUUCCUCUAUCCGUAGAGUACAUUGAAUGUACAGAAAUGGCUAUAACAGAGUUUCUGUUAUUCGUAUUAACAGCUACUCUAGGGGGAAUGUUUUUAUGUGGUGCUAACGAUUUAAUAACUAUCUUUGUAGCUCCAGAAUGUUUCAGUUUAUGUUCCUACCUAUUGUCUGGAUAUACCAAGAGAGAUCUACGGUCUAAUGAGGCUACUAUGAAAUAUUUACUCAUGGGUGGGGCAAGCUCUUCUAUUCUGGUUCAUGGUUUCUCUUGGCUAUAUGGUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

149

LEP:

30.28%

ME_num:

225

MEP:

45.73%

HE_num:

117

HEP:

23.78%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.90

Avg Expression:

60.47

Tip: OSA-PHAS112937968 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.973644336986920.0328532796953583
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h2.648028156768670.00383539370345212