Chr:
Chr2
Start:
10787273
End:
10790249
Strand:
+
Ref_name:
LOC112937952
Sequence
(XR_003240908.1):
CUAGUUUGCUUCCCUGGGCACUGUUCAUCUUCAAGCUUGGACAGAAGCCUGAGCCAGCCGUCCUGUGCCUGGAAUCGAAUUCGUUUUUGAGUUUAUCUCUCCAACUAACCCUCGGUUUUUCCGGCUCAAAUCCUCUCGGUUGGAGUCCGAUCUCUUCAAUCCAAGCCUAUAAAUAGCAUCCCCUAGUCGCCCUCUUUCGUUUGCCCCAUCUCCCGAGCUCUCUCGUGCCUCGUAGUGCCGCCGCCGCGCCACCCAAACCGCCGCCGUCGCCGGCCGGCGAACAGCCGCCUCGCGCCGUCGUUUUAGCCGUCGCCGCCGCCUCCUCACGCCGCCGUCGGGUGCGCGUGGAAGAGGGGAAGCUCCGCCGCCCUUCGCCGUCGCCACCGGUCGCCGGAGAGCCGCCGCCGCCGUCCACCGAACCGCCGCCGCCGCACAAGCUCGUCGCCGGUCGCCAUCCGUGGUCGUUCGUCGCAUUGUUUCCGUCGUUCCGGAGGAGAGCGUUUUCGUUGAGGAAGGUUCGGAAGUGUUUGCGGAAGCUCAAGGCAAGUCACCCAGAUCCCAAACAACCCUUUGAACAUGUUGAACCCGUUUAAAGCUAAUGAUUUAUUUCAACUUAUGCAUUAUUUUCGAAUGUCAUCGGGUGAUGAGCCUUUCCCAAUUAAAUAAUGGCCGAACAUGACUUUAUUUUCCUAUGGGUUAUAAUUUGAUUAGCUUGGACCUUAUAUAUUGGAUUGGUUCAGCUAAAUGCCAUAUGUAUGUUUGCUUAGUCAUGCUUAAACAUUAGCUAAUUAAAGGGGAUUAAAUAUAAAUCAUAUUAUAUUAUUAUUAAUUACGGUUAUAUUUAAUGGUAGCUCACGAUGGUUAAUCGUGUUAUGUUAUGUAAAUUAAUUGGUAAUUAAAACUGGAUUAAGGUGGGUUGUGAGCACAUGGUUUUGAAGGUCGUGCUCAUGACAAUUAAGGACCGGUUCGCGAGCUACUGUUGUGAAACAUUUACCGUGCCAACCACAAGCCAGUGUGAGCAACGGCUUUACCUUUUGUAUAGCAUGAUUCAUUACGGGGCACCAGACUGUGAAGCGGCGAGAAGUCCAUGGGGGUCGCUGGGGAGUCCAUUGCCUUUGGUUUUGAGGGGGAGAUUAUGAUCCAGGAACGGUGCACUGUGGUGAGUUGUGUUGUGCGAGGGGUAUUGUCACAGUUCCUUUCCGAGGUACCGUGGUGGUGCUAAGGCGCAUGGUGACAUGUUGUGGGAUUGCGUCUUGUGGGUACAGUGGUACACCUCUGAUCAAAGUAAAACUAUUCGAAUAGCCGUGUCCGCGGUUAUGGGUGAGUUGAGCAAUGUUUUUCGUGAUUAGUCCCACAUUACUCAUUAAUGUUAAUAAUGUGAUAAUUAAUUUGACUCCUGGUUUGGAAUGGAUAAUUCCUGGUUUGGAGGUUUGAUCUGUACGACCGGGGUUGGCUGUUCAGGUUUGGUUGGGCCUGUGCAGCAUUGGGGUGCUGUUCAGUGUCGAUUAAAAUUGAUGAUUAAUUACUCUACUGAUUUACUUCUAAAUGUUUGCUUAAUGCUGCUUUCGCAAAUGAACCUAUAUUAUGCCAUCCUUUGGUAUCCUUGUGCAUUUGCAUAUUUGCUGUGUGGCUUGUUGAGUAUGUCAUAUGCUCAUUCUUGCAAUAAUCAUCAAACCUCAGUUGAAGAAAAAGGAUCCAGAAGGAGAAGAUGUUUGGCUUAUACUCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUAUUUUCCUUUUCUUUUGUAAGUAUGUAACAUUAUUAUUAUGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUGGACGAGGAUUUUAUGCACAAAUUAGUUUGGAAAUUACUAGUGAAUUUCUGGGCGUGACAUAUUUGAUCCAAGUUUUUCACUUGCAUUUAAUUGGGAUCUUUACAUUUGAGUACAUGACACUUGUGAUAUUGGUUAAUACUCAUCCACUUCCUUUUAUAUGCGCGAUUGGUUGAUCAACAUGUAGAGGUUGACAACCAGAUCAUUGAGACCAAUAAUUUCAUUGAGUUGAAUGAGAAACAUUGGUCCCAAGGAUUGAAAAGGUGUUGAUGCUCAAUCGAUAUCAUUACAGCUAAAAUACUAAGAAUGACAGUGGAGAUAUUGAAGAUGCGGAAUACGAAGUGGCUAUUAUGGCAAGACGAUCUUCAAAUGAUUGAUGCUCGGUCGCGAUGGACCAUGUGACAGUGAAGGGCAAGCAAGGGGCUUGGCGCCGAAGAGCCAAAUCCGGUGGUGAAUGGCGAGUGACAGCUUUGUCAUGAUGGACCGUGCGAGACCAUUUGAAGCUACAAGUAACCGCAUCAAUUAUUUGAAGAAUAUAUGGUGAAACGGUUUUGGCGUUGCUGUUCCUUAAGACAAAGGAAUGAAGAUGAAAAGAAGGCAUUCCAAUUGGUAUAAUUCUCUUCCUAUAUAAAUUUGAGUAUAGUAAUAUCGUACUAUCAAGAGGGAUGCAGCGUCGAUGUGUUUGUGUAUGUUUCGGUGCUCAAAGUGACCAAUCAUAGUGCUACCUUGAGAGACACUCAAGCUUUAACAUAUCCUUUGAGUGGUUUUAACUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.8%
ME_num:
MEP:
50.0%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.70
Avg Expression:
2.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.47506006730326 | 5.99453260805389e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.57884310974515 | 9.98211482695337e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.64775083298909 | 1.08540218243441e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.07725771202926 | 0.0181151878444092 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.17900641809535 | 0.00534336387840311 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.90775251094652 | 0.000173373504757808 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.36888730873456 | 1.88757217078301e-09 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.16410588800222 | 0.0125123745555633 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.41284513651056 | 0.00573280056496262 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.25396940812375 | 0.00530460222640435 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.73756247762848 | 1.18683519032053e-11 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.15409039149513 | 0.00115271341578548 |
| 13 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.41875230185125 | 0.047425752904851 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.08640453074172 | 0.0259045523094396 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.41865423293176 | 0.0480772024603779 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.41858158395977 | 0.047569467536367 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.33143405056856 | 0.000190719357979384 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.02563477970919 | 0.0236410504497722 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.56600346804515 | 2.32508629747537e-07 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.63878544768591 | 5.43116465278141e-07 |