RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS112937950

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

10531458

End:

10538021

Strand:

-

Ref_name:

LOC112937950

Sequence
(XR_003240905.1):

UUAUGAGGAUAAAACCAAUUUGGAAGAGAUUGACCUAGAUAACCAUAGAGGGUCAGACACUUGAGACUGGUAGGAGGAAUUAGGACUUGAAGAACCUCGAUGUCAUUAUGGUCUUGCGAUCUCACAGAAGACCAUUUCAAGUUCAGUCUGUCAAGAUUUUUCUUGUUCUUUAUCGCACUUUCUGCUGCAAUAUCCUUGCUUGUUGCACCAAGAUUAUUUAUCGUCACUCCUCCACAAAUUUGGUUCACGUUCUUCAUCAAUGUGACAUAACUCCGAGGGAAGGCUUUUGAAAGGACAAGCUCCGGAGAUUUCCAGGAGAACAGAGAUACACUGAAUAGCCAUGUUAGGUGAGCUCAUGCCAUCAUAUUAAUUGAUGUGCCUUUUAAUCAUGUUCUUCAUAUAUUUGCCUUUACAAGCAGCGCAGCAGGUGUUCACUUUUCAGACUGGACUGCAGGGGUAAUGGGUUCAAUGCCGCAACUUGCUGACUCAAACUUAUGAGUGAGUAGAAGGUGCAGAAAUCAAAUGCUUUUAAUGUUGUAUGUGCAGACGGUCUGAAGCUCCACGUUCCCCUCCCUUCUUCUAAACUUGCGCGUCUCCCUCCUCUCUGGUGCGGCGAAGGAGGUGGCGCAGGGGUCGAUCCGGUGGCCUCGAUGAAGGCAUCGGAGCUGGAAGGGCGCGCUGGAGAGGGAGGGACGGUGCCAAAGAAAAAAGCACCGGGGCCGGAGGGGCCAUGCCGGAGGGCCGCGGCAUAAAGAGGAAACAUCAAUAUGAAUAUGAAUAUGAGAAAUUCUAAAAUUAUUUACAUUGUGAAACGGAGGGAAUAUUACUGUAAGGUGAUGGUUCUUUUUAAAAGGAUUUUUUUUAAGGUACCAAAUUUAAGUGGAUGGAUCUAACGCACCAGAAUUAAACACACGAUACUAUGCGUGACAGUAAAUUUGGUGGAUGGGUAUAAUAAUUGGAAAAAAUACAGGAUCUUCGUCUCAACUGAAUUUCUGUUUCUACCUCCCAUUUUUCCCGGACAGCAUGUGCAUGCAUGUCGACGAGGAUAUUUUCCCCGAUUUCUUGUUUUAUUAGUUGAUAUAUUUUAUGAAAGUGAUUUAUCUGUUUGUUAUUUAAUUGCUGCUUAUUCGGUUGAAAGAUAAUUAUCCAAAUUACAACACGCAUGCAUGCAUGUUUCUUCUUUCUUCCUUCUUCGGCCAUGCUACCCAAGCAUGCGCAGGCAGCCACUGCCCUGUUAAUUUCUUUUUCCUCCUCCUUUGGUGGAACACAAGAUUUGCAUAAUCAUGCCAAGUGUAAAUCAAUCGAUUAUCCUAAACAGGUAAACAACACAGUUGCAUUCAUAUUCGUUCUUUCAUACUCAGAAGCAAAAUCUGGCUCCACGGCCCACGGGUAGAGAUGUUAUCGAUGCUUGCGAUCGCUAUAGCAGCGAGCCUGUCGACGACGCUGGCUGAUCAAGUCGUCAGUAAUGACAUGCAGCGAGGACAAUGACGAGAGAUACUCAUUGUAUGAUUGGUUUAGAAAAGUCAAAUGCCACAUUACUGAUCUGAUUUAACGAAAAGUCUAAAGUACCCAUAUAAAUCAAUGGUCCGAUGGUCCGAUUUAAUGAUACUCUAAAAGAUACCGUAAAAGCCACAUUACUACGGCCCUCUUUGUUUAGGCUUAGGUUUAUUGGCCUAGACUUUUAAGUCAGCUUAUUGGCUUAUAUGAUUUAUAAGCCGGUGGAUUUAAUGUCCUAAGUUUAGUAGUUGAGUCAUAUAUCUACCUCACAUAAACCAAAAAAGCUUCUCCAACCUAGCUUUUGGCUUAAUAGUGUUAGAGUGGCUUAUGGCUUCAAAAAAGCCAAACGGAAAAGCUGCUUGUUUGUUUAGGCUUAGACUUUUCGACUUAUAAGUUGGCUUAUAAGCCUAAACAAAGAGGGCCUACAUUUGGCAGUAAAAGACACCGUAAAAGCAUCCUUUUAAAAGAUCGGCACCAAUAGUAUUUUAUGUUUCCUUUUAAAAGACCGGCACCUUUUAAAAGAUACCAUAAAAGCGCCCUUUUAAAAGAUCGCUAAUUAUGUCUACAAAGGCUUAGAGGGAUAGAGCUAAAGAAUGUUUUGAGGUCGAGUCAGGGGACCACUCGGGCUUGUUCUCGGGAACGACAAGUACGGGGUCAAGUUUGUCUUUCUGAAGAUAGAGCCACCUUGACCUCCACGAGCUCUGAGAUGAGGAGCAUUGGAAGGGGAUAUAUUCCGCCUUCAUACCAUCUCGGAGACGGAACCCGCAGCAUUUGGAGAUCCUGUUGGACUCCAUCAUAUCCAUCGGAGCUUGUAAAAAUAGCGGAAGAGAUCAAGGAACGGCACUACACCGACGUAGGCCUCACAAAGAUGAGCAAAUAUGCUCAAAAAAGCAAUAGAGUUAGGGUUCAAGUGAAGGUGGAGGCCGUAGAAAUUUACAAUCAAGAGGAGAAAUUUAGAAGGAGGAGGUAGGAAACCGCAUCGAAUAAAAUCCUCUAACACCACAACUUGCCCUCGGGCGGGUUUGGGUUUCUGUACCUCCUUCCGAUCGCUCUAGAUCCUGGUGGCCAGGCAGUGACUCUUUCAUUCGCAGCUUCAUCCCGGAGGUGUCGAUGGAUGAGGCUCCAAGAUCCAUUGAUACGACGGAGAUGGCCAGAGAAGAAUUGGGGAAGUUAGGGUUUUCUGGGAGCCGGAGGAACCAAGGUUUUGUGCGCAAGGGAGGCGAAAGGUGUUGAGUUGUGAUCCAAAUUCAUUUGCACUUAAUAAAGGCCAGCUUCUGCCGUAGUGGAGCGGAGGCCCGUUGCUGGGAGGCUUGGGCCGGAGCGUCAUCCCUUUUAGGGUUCCACCAUAUAUAUACCUCUUGUAAGCCGCCGUGCGGCGUUGUAACCUCACCUCAGAUAUAGUGAAGAUAUUUUGCUGGCUGGCACCCGUGGUUUUUUCUCUCCUGCUUUGGGAGAGUUUUCCACGUUAAAUCUCGUGUCUUCUGUGAUUGAUCUAUUGUUCUUCAUCAUUUGUUUGCUUAUCGUUUCCUAACAAGUGGUAUUAGAGCUUGUUUUCCACAUUAGGGUUUCGCGAUGGCGUCGAUGAAGUAUGAUCUACCGCUGCUAGACUACAAGACGAGAUUCUUGCUGUGGCAAGUCAAGAUGCGGGCUGUUCUGGCGCAAACUUCGGAUCUUGAUGAGGCGCUGGAAAGCUUCGGGAAGAAGAAAUCGACUAAAUGGACCGCUGAGGAGAAGCGGAAAGAUCGUAAGGCUCUGUUGCUGAUCCAACCUCAUCUAUCUAAUGAUAUUUUGCAAGAAGUGUUGCAGGAAAAGACUACUGCAGAACUUUGGCUCAAACUGGAAUCGAUCUGCAUGUCUAAAUAUCUAGCCAGUAAGAUGCAUAUCAAGAUGAAGUUGUUCUCGCACAAGUUGCAGGAGAGUGGUUCUGUGUUGAACCACAUAUCGGUCUUCAAGGAGAUCGUUGCUGACCUAGUGUCGAUGGAGGUACAAUUUGAUGAUGAAGAUUUAGGUCUUUUACUGUUAUGCUAACUGCCUAGUUUAUAUGCAAAUUUUCGUGACACCAUACUUUUAAGCCGUGAUGAACUAACCUUAGCAGAAGCUUAUGAGGCGCUCCAAAACAGGGAGAAGAUGAAAGGUAUGGUUCAGUCUGAUGCGUCGUCCUCUAAGGGCGAAGCAUUGCAGGUCUGAGGCAGAUCUGAGCAGAGAGCCUACAACGACAGCAAUGAUCGUGACAAGAGCCAAAGUAGAGGUCGUUCUAAGUCCAGAGGUAAAAAGUUCGGUAAGUAUUGCAAAAAGAAAAUUCACUUCAUUGAAGAAUGUUGGAAGCUGUAGAAUAAGGAGAAAAGGAAAUCUGAUGGUAAGGCCUCUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

442

LEP:

89.84%

ME_num:

49

MEP:

9.96%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.83

Avg Expression:

1.23

Tip: OSA-PHAS112937950 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"2.34753703246352.80012283206287e-09
2Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"2.053461555583411.25940919573949e-06
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256-1.958941067645290.0281382488725489
4Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279-2.022209859467990.00923271959733393
5Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8-2.972553796223150.00356775004288508
6Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-2.046531216117740.00336788226785622
7Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341-2.082001305493150.0136661109833924
8Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342-1.975645903575470.0113147188995281
9Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-2.239482618394010.00126049055414704
10Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-4.268923943257630.000475989802158089
11Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-2.937311069990948.49879949403889e-06