Chr:
Chr12
Start:
24254464
End:
24263360
Strand:
+
Ref_name:
LOC112937406
Sequence
(XR_003239971.1):
ACUGUGCUUCAGACUCUCUGGCUUCUCCACACAUGUUUGGCAUACAUAUUGCAACUCUUGGUUUGGUGCUAGCAACCUGUUUCCUUUUUGAGGAAAAGCUAGCCAACCAGUUUCUGCAUCUUGCAGGCUCAGGGUUUCAGAGUUCAGACCAGCGAAAUGGCGAGUGGAUAUGAAUAUGAUCCCUCAAUGUCGAGAAUGCGAAAUGCAGCUUCUUUCUUCACAGUUGUCGACUCAUGAAGCUCGCAAAAUCAUGGUGAACUCCCCAAAGAUCAGUUCGUAAUGGCUUUGUGUUAUCAUCUUGUACAAUCUUUGUCUGGAUCAGUAUGGUUCUGAAUCAAGACAGGAAACACAAGUAGCCCUCCAGUCCCUUCUCCGAUCUUGUCUACUAUUUGUUAAAUGAUGUGAGAAAGCUAUAUAUCAUGUUAAUUGUUAGUUUGACGUCAUCUUCCCAACCGUCUCCGGCGAGUUUCAUGAAUGUGUUGUGAUCACUCAUCAUGCAUGAGUUCGGUCUCAAUCUUCAGUCACCCAAAACACAAUACUGAAAUACGUACAAGAUAAUCAAGAUUGAGUAAUUUGGUCUCGGUCAAGACCGAAAUACAAUAAUUUUAGAGUUGGAAAGAAAUCACAUAAAUUAUUAAAAAAAAUAUAAUAAAAAAAUCCACAAUAAUAAUAAAAAAAAAUCAUGUGUCACUGGUAGUGGGUGCCCUCCAGUCGACCUCCUCCGCCUGUCGCCGCGCCCUCCUCUAGGACACCACCACCACUAGAUCUUCUGAGGAGGACGGGUUGCUGACCCCUAGGCACCAGUGAUUCAGAGUGGCGGGACAAUGACAUGGCGGAAUGGUGUGAUGACCAAAAUGACUGAAUAAAAUACGGUUAGUUGAACCCUAAGACCGAAGUGAUCUGAUGAUCGAAUUUGUCGGUCUUCAUUUUCCGAUCUCAGUCACGGUCUUUUCGAUUCAGUCUAUUUUUGCUAUCCCUAGCUGUACUGAACAAAACACUCGAUUCUCAUAUAUAUAUGAUCAUGUCCUGUUUGCUCUACAUUUAUAAAAGAUAAGACCAAUGAGCACAGGUUGAGAAGAUGAAGAAGACUCGAUGGAUGAUCGACCUCUUGUUCUUGCCAUGAUAGCUAGGCUUGGGAGGAACCGGGAGCUGUCUUUUUACACAUAACCAUCUUCCUACCAUAUUCUCCGCGGUUCAUUUGUCAAGUUAGUAGAUCUCAUUAACCACUCUUAUUCUCAACGGAUCAUAUUACAUUUUAUAUGUAACUGGUCACCAUGCAUCUACUUUCCUUGGUAAGGCUAUAGAUUAGAUCAAAGCAAAAAAAGAACAAAUAAACAAAAAACGCUUCGAGCAAAUUCAAAGUGCUCUAUUGCUUACCAACUGGUUUAGUCUAUGUCACUUUAAAUGAUCUCCCAUAAAUUCUUCUUGCUCCGGGUUCGGUCUAAAGAUUCGAUUGCUUUUUUACACGAUGUUCUAGAGUUGUAUGAUUGGGUGAAAUGAUUUUGGGAUGGACGUUAAAGAAUAUCAGCUACUAUAUUUCUGAUUACUCUGUCAGUAAUGUGUGAAUUUACUUCCAGUUCCAGCACAAGCAUUCAUUCAUCCCAUCAAACAUCAUAAUCAAACCCAGCUGCACAUUGAACUCGGAUACAGGUCCUGAAUGACUGAAUUUUUAUUUAGACAGUAAAUUAAAUUCCUGUGUAAAAUACCAUAUGAUCUCCUAUGCUCCAUAAAAGAGCAGACGAAAUGAAGAAGCAUCAACUUGUUUUUCUUUCCUGACAUUCAUAGAGAUGAAGAAGAGGAGCUCAUGUAGUUAGGCCUGGGAGGCGUCAGGAUAUAUCAGAUAAGCUAAUUGUAAGAUGCUGAAACCAUUCUUCCUCUCAAGCAUCAAACAAGUUUCAGACUCCAAUGGACUUGUUUGGCAUGCAACCCCUUGAUCAUUUGAUGCUAGCUAGCAGCCAGUUUUCGCAUCUUGCAGAGUUCUUCAGUGUUGCAGGAGAUGAUUUCUCAGUCCGGAUUAUCUCAGUGUUGAGGGUUUGUGAUAACAAAGAAACAAUUCAGCAUUUGUUCUUCGAGUGCCCCAUGACAAGAUUCACUUGGAAUGUGAUGGCUUGUGUCUUUAACAUAAAACCUGUCAAUGACUUACAUUUCACUUUAGGAUCCUGGAUUAAUUCAAGCAUGUGACAAAACAACAAAACAGCUGCUGCUAGUUGGAAUAGCUGCAGUGAUUUGGGCUGUGUGGAAAGUUAGGAAUAAAUCCUGUUUUGAUCAAAUUCUCCCACAUGAUCCUACUGAUAUUUUAUAUUAUGCUGCUUGCUCCCUAAUGACUGAUUGGGCCCUUUUUGCAGAGUUCGGAGGAAAAGCAAACAAGAUUGAUGUGGGGGGGGGGGGGUGCAAUUGCUAAUAAUAAGGCAAAUAACAAAUGAAGUGUUCAAGUCGCAAUAUGGAUGGAGGACAAAUUAGAGAAGACUACGAAACGAUAAAAAGUUGGAAGAACUGAGGAAGAAUGAAGAUGUGAAUGGAAUGUUAUGCAGACACAUGUGAAUGGCAUCUUAAAAGUUGCUGCUGAGUUUUUAGCACUAAGUUGUAUGGUCGAAGACCUUAGACUGUUGGGCUGUUGUCGGUCGGCAAACAGUUGUUUUCUGUUUUCUUUUCUCCUCUGUUGGUUGUGAGCACCUGGGGGAGUUCUCCUCCCUGCAGGUAGUAAGACUUUUUUUUUUUGUAGUAGUAGUGCCACAUUUCUUUAAUAGAAAUGGAGGGUAGAUGCAACUCUUGAUUUGAUGCUAUAGCAACCAGUUUCUGCAUUUUGCAUGGCUUCUUCAGGGUAGCCACUAGCCAGAGAUUGCAGUUGUGAGUAGAUAUGAUGAUCCGCUGGACGCGGGAUGGCGGUGAUCGAACUUCAAGUGCCAAUUCCAUUGACGUGAAAAUGUGAUGCAAUAGCUUUCAUCAUAUUUGAUAAACUUGUUCAGACCCCCAAGGUCCUAAUAAAUAACAAAAUUAACGAAGUUAAGCUACAUUUGAGAUUAAUUACAUCUAGAUCAUCUUCUCGUUAUAGGCUUACAGCAUACAAAGAGAUGAGAUAGUGCAUGUGCAUAAACAGCACAAACAUAUGCUGCUGAGAAAAAGAGGAUGAUCUAAUAUUAACCAUAUGGUAGUUAGGCAUGGGAGGCAUUGGGAGAUCUCUCCUGUCAAUGGGUCACUUGCUGCUGUGUUUCUUUUGCAGAGCGUAUUCAGAAUUUUCACCACAUACAAUGAACCAAAUGUUUCAGAUGCACCAGGGAGUACUCAGAUUACAUUCUGCAUGUAACUAGUCUCAAUGUAUGUGAUCUAUCUUUCUCUCAUUGUCACCUCGUGCAAGUUCUUAACCUAACCAUUUUGUACUUCUGGAUUUUCAUCUAGUUUUCUCCUAGAAACAUUGAUACAAAUUUGUUGAUGCAUCAGUCUGGCCUGCUAUGUCCAUCGACUAGAAGCCCAUCGAGGAACAAAACACGCGAAUGUCUAAACAUCAUGAAUAUUGGACUGUAGUUGGAAUAUGCACUUAGCUGAACUUCUGAAAAGACAUAAUUAUUCAAUCCAUCUGUUCGUUUAUUUUUUCGAAAUGUCCUUACAAGUUCAGAGUAGACUGUAGGAGCAUGCUUCUGUUCAUCCAAAUAAUUGUCAAUUUCACGUAAAAAGAAAAUUACUAAUUUCAUGCAUUGUUUGCCUUUCUCCAUGACAGCCAAACCAAACAUCUUUAAUUUUUUUUGAGAAGAUCCAAAUGUCUUGGUUUAGAGCUUUUAUUUCUUAAUUGAGAAACUUUAUAGUCUUUAAGAGUUACCGAGAGGGAAAGAUUUUUGGUGCAAAAAUUUUGUACUCAUAAAUCCUAGUACGUGAGAUACAAAAAGGUAUUAAAUUUUAAAGUAAAAAGUGUGGUACCUCCCGGUAGCCUUCUUAAGAACCAUAAAAUUAAUUUUCUUAGUUUGGUGAAGUGGCAUUGGUGAACAUUCAUUAUACUAUUGAAAGCAGGAGAUGAAGGAGAACAAUUCAAUGAUUCAUUGGUCUGUCAUAAUCUCAUCGAUCACUACCACUUUAUAUAUAUGGAGAUAUUGAUCUAUCACAAUGUUAGAUAGUCCACUCUCAAGAAAGAAUUAGCAUUAAUUACACGUCUCUAGUUUUUCCAGAGCUAAGUUCUGCAUUUAAAUGAUGGCAUUAGAUCAUAUGAUAUAUAGAUCAAUGGACACAAAUGCUAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAACAUUGUUCAUGGAACUAGAAACUAAAUUUUCAUGUUCGUUGGCCUAGGAGGUAUCAGGAGUUCACAUGUCACCUUGAUACACUGCCGAACAACUGAAUGUAGCAAACCCAUAUAGGUGGUGGCUGAGAUUUUUACUCCUCUUCUGAAUCCUUGCCCUACUAUUUUCUCCAUCUCAUUUAAAAAUAGUACAAGGAAGGGAAUAAUUAUCCAAAGAAUCAAGGAUAUGAGAGGGUAAAGUUGCAAAUUACACUAUUUGAAGGUGGCUUGUUGGUGGUGAGGAUGGGCAGCUUGGGGCGGCAGCUGGCCGGCUACGUUAGUCAUUGGGGGUAAUGUCGUCGCUGGCAAUGUGUGGUGCACAUCUCUCUUUGUUGUUUGCUAAUCCACUACACGGUAAAUAUUGUACAGCCAGACAGAAUUCGACUAUCUCUAGAUGAGAAAUAUGUUGUAAAUAUACUUUAUAAAAUACUUAGUCACACCCAAGAAGAAUUUCCUGGAGAUGCCACUGAUUUAAUUCGGUGGUGUACAUGUGAUACAGUUCUUUUGGAUGCAGGUCGUCUGCAGUACUGCACUGCAGGGGAUCUCAGUUGAGUUCUUUUUGCUCAUGGUUUGUUCGAAAUUCAGCUGAUAAUCGUGCUUAUCUGUAUGGAUCGGUGUGCCAUCUUACACAAUCUUGUCCAUAUUAGAGAAAAAAAACAGACACAGAGACUUCCCAUCAAUCCAUCAUCCUUUGAUCUCUUGUUAAAUGCAGAGGGCAAACAUUGUUAUAAUCUGAUCUCGUCUUCUGAAAUUUCGGACCCCCCUGCACUAAUCGAUUUCGCCCGAAAACUUCAGUUUUUUUUUUAACUUUUUUAGAUUUGGUUGGCGACGAUUUGAAUCACCAGGGAGCAAUAGUGAAAAUUUGAAUUUAGAACUUUUUAAAGUUGAUUUUGCCCUUUUUUUUCAGCUUGGGUUUUGAACUGCUAAGAAUAGUCUUAGCAGUAUAAAAGUCUUACUAGAAAAUUAUUUAUUUUCAUUUUUUGGCUUUAUUUUUCUUGGUUUAUAAGCCAGUAGCUCAAAUGCUCAAUCAAUGAGACAGCUUGGAUCGAUGAUAGCGUUCCAAUUCUCAGGUGAGUUAAAGGAUAUUUCGACUUUUUUAAAAGACAUAUUUCGACUUCAAAGAGGGGUUUCCUACGCAAAACACCACUUCCUGACAUUAUUGGUGUUUAUCUGAUAAAUUAGUAGUCACAAAAUAAAUUUGGCACCAAUUAGAACUGUCACCUCGUUAAUUUGGUCUCAGUUUUUUUUUCUGUUUGCAUCAGUACUGCCUAGCUAAUACAGAGUAAUAAUACUAGUGGUUUAUUAUGCAUUGAGCUCAGCUGUACUGAACAAAACAAUCAAUUUUCAGAUACGGCCAUGUCCUGACUCCUGUUUGCUCUACAUAUAAAGGAGUACAUGUAGAUGGAGAUUGUUCAUUCCAAUGGCUAGUUGGUUAUCGAUAUGGGAGCUAGCUAGUAGGCUUGGGAGACACCAGGAGCUGCUCUAUUACAGCGAAUUUGCUGAAUUCUGCAUUUGAUGGUAGGAGCUCUUGAUCAUUUGAUGCUAGCAAACCUGCUGCUGCAUCUUGCUGGCUUCUUCAGGCCGCACAGCUGGAAGAAGACGACGUCAACUGGACAGAUGAAUCCGGUGCACUGAUACCAUGUUAACUCUAGUGAAUAAUAGAAAUAGGGAAUAGAUUUGUUGUGUAUAUAUUGAGUUAGCGCCAAUGACAUAUAUUGAGUACAAUAGAGAUGAGAAAUACCUCUAAUACCCCCGACACAUCUCUACUCCCUCCAUCCUAUAUUGAUCAUCUCGUAAGAUUUUUGAGGUCUUCCCAAAUUCAUGAUCAUCUAACUGUGCCUAUUCGUUUAUUUGUGCAAAAUUAAAUAGCAUUGUAGCAUGUCUGGUUGUUUAUAUGAGCAGGAGUCAAUGUCAUCGCUGCAUGUCAAUUCAUUUAUCUGUACAGGAGUAAAUAGCAUCGUUACAUGCUCACCUUAAUCGAUAAGAUUUAAUUUAAGGAAGGAUGUUUUCUUGCCUUGGUCUUGAUGCCCAUUUAUAAAUGAGAUUUGCUCCAGUCCAGCAAAAAGUACCUCGAGAUACCGGUAUCUCACGGUAUCAAAUCGUUUCCGAUCGUUGGAUCAAGCUGGACAUUGUUAGAUCUAACGAUCGAAAAUGAUUUGGUACCGUGAGGUAUUGAUACCUUGAGAUACUUUUUGUUAGACUGGAGUAAAUCUCUUUAUAAAGACGAUGAUCAAAUUGGGAUGGUGGGAAUAUUUUUUUAACUGGUAGUAUGACGUUGUUAAUCUUGAUAUCAUCUUCUCGUCGCCCUCCAGCGAGUUACAUCGGUGCUUUGUGAUCAGUAGCACGAGUGCUGUUGAAGCUUGCAGCUUGGCUGCUGUGCUCGUGCAGCCUUCGAUCGAUCAAACCAGUGCUAUGUAUAGAUGUGAUGUGUGGUAAUGAGAUUAUCUGAUAAAUUGAUGCCAAAUUUCUUGGCAGAAAAUAAACCUUGGAUUUAACCAUGGUAAUUCGGCAUGGGAGGCACCGGGAGAUGUCCUGUGAAUAGGUCGCUUACCUGCAGUGCUUUUUGGCUGAGCGUUCAGUAUACCCAAUGAACCAAAUGAGAGAGAUGCCCCAGGAAUCAAUUUAUAUCUUUCUCUCACAGCAUUUUACAUCCAGAUUUUCUUUCAUUGUCCCUAUAAAAUUUGAUACAAUUAUUAGGUUGAUGCAUCAUUCAGGCCUGCUAGGCCCAUCAUUAACUGGAAGCUCAUCUGAGGAACAACACGCGCGCGAACGUCUAAAUGCCAUGAAUUGGACUGUAGUUGGAAUAUGCACUUAGCUGAACUUCAGAAAAGACAUAAUUCAAUCCAUCUGUUCGUUUAUAUUUUUCCAAAAUGUCCUUACAAGGUCAGAGUAAACUUUAGGAGCAUAUGCUUCUGUUCAUCCAAAUAAUUAUCAAUUUCACGAACAAAAAACAAUUACCAAUUUCAUGCAUUGUUCACCUUUCUCCAUGACAGCCAAACCAAACAUCUUUAAUUUUUUUGAGAACAUCCAAACGUCUUUAUUCAGUGCUUCAUUUCUUAAUUGAGAAAUUUUAUAGUCCUUAAGAGGUACUGAGAGGGACCAAGAUUUUUAAUUAGAAAAAUUGGUACAUCCUAAUGCGUGAGAUACUAAUAGGUAUCAAAUUUUAUAUGAAAAAGUGUUGUACCUCCUAGUACCCUCCUUAAGAACCAUAAAAUUAUUUUUCUUAGUUUGGUGAAGUAGCAUUGGUGAAAAUUCAUUAUACUAUUGAAAGCAGGAGAUGAAGAGUACAAUUCAAUGAUUCAUUAUUGGUCUGCCAUAAUCUCAUUGAUCACUACCAAUAUAUAUGUAUUGGGAUAUUGAUCUAUCACAAUGUUAGAUAAUCCAGUCUCAGUUACGUGGACAUACAUUUAUGUGCUACAUUGAAGUACUAAAAAAUGAGGGUGUUGAGCAGCUACAUCAGACCAAAUAUUACUUAGUAUUGACACAAAAUUGGUAAAUUUUACAGAGGUCUCUACUGCUAGUAGAAGUGAUCCAUGCCCAUCAUCAUCUUAAAUCCAAGGGGCUAGACUUACUUAUACUGCCAACCAUGGUUUGCAAGUUCGUUUCAAAAUUUCCGAGACCCACUGGCACGAAAAUAUUUGGCCCAAAAUUUCAAUUUGUUUCAAUCUUUUUUUUUUGUUGUACUCUUUGUUCUUGUUAGUCCUUCUUACUUCUGUAACAUGUACUCCAAGAUUAAAGUCUCAACUUAGUGGGGAUAUAGUACAAAUGGUCAGGACUUUUGGUUUUAUUUUCCUUAUUUUUCCCUUCCCUUUGGAUUUGUUCAGAAAACUAUCAGAAUCAAAGCAGGGGCAUAGCUGCACAUUGAUCUCGGCUGCAUGUCUUGAGUGAUUGCAUGGAAUCAGACAAUUAAUUCCUGUAUGAUAGCAUUCUAUCUCCUCUGCUCCAUAAAACAGCAGACGAAAUGAAGUAGCAGCAGCUUGUUUUUCUUGAUUGAUUAUUUGGUUUUUAUCAGAGAUCGAUGAUCAAGAAGAGUUCAUGGGGUUCAGGCAGCCCAGGUAGGCCUGGAAGACAUCAGGAGCCGUCAAAUGCGCCGAUGGCUUAUUCCAAGUCGCAAGACCAAGAGGUCAUGAUCACCUCAACAUCAAGGACACAGCACGAGUCUUCUCCUCCGUCCGGUUUCCCGAGUAACCGUUGAGAUGCUUCCAAUGAUGUACAUGUGAUGCAGUUUAUUUAGCUGGUGAUUUAUAACUUGCUGAACUCCUCAAAUUGUUCGUGCUAGCUUCCUGCUUUCACCUUUCACGUUGUUGUUUUGUGAAAAAGAGACAUCCUCUGCUUGCGAAUGAUUAAUCUGGUCCGCUUGAUCGUGAUUGGAAUGGAUUAGAGAUGUUGUAGAGUUGUAUGAUCGGGUAAUGAUUUUCUGAUGGAUUGCUAAAGAAUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
98.37%
ME_num:
MEP:
1.42%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.96
Avg Expression:
0.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.0499606849242 | 0.000284487197764077 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.6295519672004 | 6.48171620978973e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.74056384677536 | 1.34526118588417e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.73822474189372 | 0.000165111515323113 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.98718821882332 | 3.90694468219749e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.15401682598043 | 2.33912996774524e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.7667709603306 | 0.0381206302182195 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -3.19989003259223 | 0.00101923576756035 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.85088127632004 | 7.95832941295791e-07 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.30039702546598 | 0.000753482830604779 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.40532567406507 | 0.00670269433982133 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.55370010375873 | 2.1438176675912e-06 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.03060652146537 | 3.26657137945436e-07 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.48432943145461 | 0.000125087919872494 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -7.16929604736257 | 1.14235299314027e-07 |