RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS112937361

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

21016767

End:

21021109

Strand:

+

Ref_name:

LOC112937361

Sequence
(XR_003239901.1):

AAACAUUCAAGUCUAGAUUUAAAAAUUUUUGAGUCAAGAUUUAAAAACAUUCAACACAAAACAUUUGAAAACACGUGUGCUAGAUAUUAAAAAAUAAUCAGUAAAAAGCGAAAAAGAAAAAGAAAAAAAAGGAAAGCAAAAAAAUUGCAAAAAAAGAAAGAGAAAAAAAAUCGCCACGCACGGGAUGGGCUGCCAGCUGGCGCGCGCGCCGACAACGUUGCUGGUGCGCGCGCGCGAAUUAGCCGCCGCGUUGAGAUUUCUACUGACUAAGUAUGAGACAAGAAUAUUAAAGACCUGUGCUUUCUUUUAUCUGUUAGUUAUGGAGUCUGUAACGUUCAGAAGUUGCUAAAUAUCGAGGAACUUCAUUCACAUUCAGAAGAUGAUUGACGGGUUAGUAUUUCAAAGGGAUACUUUCUGUGAUAUUUUCUAUUUCAGAUUUUACAACCUAAACUGAUCUCAGAUUUAUUCUCAUGCAGCCAAUAUGGUUCCGAAGAUGUCUGGCAUGGAGAGUUGGACAAAUUAAAAGUGGUAGUCUGGUGCGUGUAUAUCAAACUGUACUGCAGGUUUUGGAUAAAUUGCUGUUUAAUAGUGGUAUGUGCAUUUAACUGAUGAACUGAAGAAUUGAUUAUGCGUGAAGUUGUAGGUGCACACUGAACUUAACUGCAGAACUUGAAUUACUUCACAGAAUCAAUAUUGCGCAUUCAUAUAUCGUAUUGUGCUACAUUUUUUUCGUCCAUAAAAAAUAUAUAUAUAGAUGAUGAGUGAGUUCUAAGCUCAGGUUCUACAUGCUGACGGAAAGAAAUGAAGAGUUGUAGUGAGUACCAGUCCGGUGUCCAUUGGGUUUCUAUCGUAGGUUUGGGAGGCACCGGAAGCUCUUGUCUUAGAAAACAUCCAAUCCAGCUGGCUAGUUAAUGCGCAAUUGGCUUAAUUAGUUAGAAGAAAAUCCUAGCUAGUCAACCUGAAGCAAGGAAGGAAAUUUGCAACCAAAUUUUCUUUCAAAAUUUGAAGAAUUUUCAUAGAAUACAAUUUGAUUCUCAUCUUUCAUUGGCUUGAUCCAAUGACUUUAAAUGGUUUCGGUAGUAUUCCAGUUUGGUUUGCUCAACAUUUGCCCUUUGUAUCCAAAACUACAAUUAUAUGUAUCGAUUGGGUUCUCCGAGUUGAUCCAGAUGGAAUUGUUCAAAGGGAGAUCCUAGCGUGCGAACACAAGGGAGAGCUCUCAGCCCAUGGACCAUUCUAGUUGGAAUAUGAGAUGAAUUCAAUGCCUCAUGUGACUACGUCCAACUCUCUCUCGCUCUCCAAAUUUCUUGCCGAAUUCCCUUCUAACAUUCAAUUGUGAAAUAUUUCAAAUCAAUUAAGUAACUUUGAACUCAAUUUAUUUAAAUUAUAUACGCAAAUCUCAAAAGUUUCUUAUAAAAGAUCAUAACUUUCAACUUCGCUUCAAUAAUAUUCUACUUAGCAGAUUAUAAACUUCCAAUUCAGCGCUGAAAGUUUUAGCUAAAAGAAGUAAAAUCAUUCUAUUUUAUUUCACAAAAAAAGUUAGGAAAUAUAAAACUUCACUCAAUUCGAAGAAACUUUUAAUACAAGAAGAAAAUGAUACAUGUUGAGGUGUUAGAAAACUUUCAAGGACUCAAAAGAACAAUGAUAACUUUUCUAUAUGUUGCCAUUCAAAUAUCAAAAUCCAUGAACAUUGUUCUUAUAUUAAAACAAGAAAAAGUGAUGGGCCAAUAUAACUUAGGUUCAACUGUUCAAGCAUAUAAAUUGCGAGAGAAUUGUUCUAGUCCAGCAUAUUGUAGCUCGAGGUACCGAUACCUCGAGCUACUAAUCUAAAUCCGGCCGUCCAUUUUUUGGAGGGUAUGAUUGGAAACCAAGCAAGUGCAAGCCUUGCAUGCUAAGUCCAGCUUCUUAUGCUCCUUCUCUCCGACUGUGUCUGUGCCAUCGUGCUCUCCAAAACCAAGAGCAACUCCAAGCCAAAGAGAAGCAACAAUCAUGGCGUGGGGUUGGAUAACGAGGAGCCCGAGGCGGCGCAGCCCACCACCAUGGAGGAAAAUACCAUGGCGGCACCUGUGAUAGCGCGGCGGGGCGCGCAGAUGUGCUGCCAUCACAAUACCGUGACAGCUAAAGGGGAAUGGGAGAAGGCCUUGGAGUUAGUGGAUGGGAAGAAACACACGUGCACUGAUGUGUGGCCAAGAAAUCGGUGGUGCAGGCAGUCGUCCAGCAGCUUUGAACCUUUGACCAACAGAAGCACUCAAUUCCUCAUCCGUCCAUACAACACGAAAAUAUGUUCUCACCCUUCCACUAAUUGUUAGUACACGGUACAACCCCAAGAACAAUAAUGGUAUCUCACGGUACCAAGCUAUCCUGGCCGUUCGAUCUGGCUAAACGAAUGACCACGAUUUGGUACUACGUAGGGGUGUUGGACGAUAGAAAAAAACCUCAACUUGUAAUCACCACAUGAGCAGAUUUUGAUGUUAUCUUUUGUUAAAAAGGCUUUGAAGUUUUCUCUCUCUGCAAAUUAAGACUUGGGACAAAAUGGAUGACUAUUCUGGAAGUAAGUUAAAGCAGUGAUCUUGCAAUCUUGCAUUAUAAAUUCUGAAGAAUGGUUUGUUUAAUAACAUCUGAAGGAACAUUAAUGGAUCUUAAUUGACAUUUUAUAUAGACAAUGCCAUUUAAUGAACCAUCAACAUUUCCUUAUCUGAACCUUUUAACUGAGCUGAGCGUCCGUGUAAUUGAGCAUUAAGAUAUUACUAUAUGUCUCCAAUCCCCCAUCAGUUAAUGGGCCCAUAUAUACAGGUACUGCAUUGAACAGCAAAGAUAGAGCUGAUUAAUAUUUGCAUAUAUAGAAUGAAAUUUUGUAUAAAUAAAAGAUCAGAUGAAGGAUGAUAUUAUAAGAUAUUCUACACGGUGAGAGUGAGAUGAACAACAACACUUCAUGGACAGAGGCAGACCGGACCACUGAUCUAUGCAUGCAACGGGUUGCUUUGCUAUGCAGGGUUGUUUGGCUUAGGAGGCAUCAGGAGUUGUCAUUUCACCGGGUCAUCAUUCUCAUUGCCAUCGUGGUGGAAUCUGAUGUAUGGUCCAGAGUGCGCUCGCUGCUGGCGUGAGUCGCGCGCUAUGCAGCUGGGGCCUCCAUCACAUUGGUGCAGCUAACCAGCACCCUCACAGGAUCGUAUUUCCUCAUAGAGAGUCCAUGCAAUUAGACCUGCUAGAACUGGCUGAACCAGACUGUUUUUUUAUGAAAACCGACAACCCAAUAUAUGCUUUGUUGAGGCUCAAUACGUUUAUUUUUCAACAAGUAUGAUAAAAAGACGUAAGAGAGGAUCGAACCCCCUUAGUUGAAAACACCGCUCCUCUACCAUCUUCCCCAGCUGUUCGCAGCUAAAUAUAGUUUCUGGUUCAGCAAUCGAUCGGAGUGGCCAACCUGGCGGUUUGACUAGUGAACCAAUGAACCAAGAGCUCAAGUGGUUCAUUGGCUGGUCCCCUUUUUUAAAUUAUGGACCUAACUCCGCCACAGGAGAAGCCGAGCCGAUCUUGGCAGUUCAAAUGCAUCAUAGCAUCUUAUGUUCCCAUGUGGAACCAAAACCGCAUGUUGACGGCAUCGCAGGCUAUCGGUAUGUUAUCUCUAGUGUACAGCAUCUCUAACAAAAUCAAGCUCAACCUUGCAUUCUAGCUUCGUCCUGUCACUGAACGCCAGUUCACCAGGCCAGGGGUUCAUGUUAAGCCUAUAUGGAUGGCACAGGCUACCAGAGUGUGCAGCAGCAAAGUACCCUAUCAUGGAAAAGCAAAAAAUUGUGAGUCGGCGUUAUUGAGCCAACGGUGGUGACUGACAGCGCUUGAGUAUGUUUGUGAAAGACACAAGUUUGCCUCCAUUUCAGAUUGUUUAGGUCCUGACGGUGUAUCGCGUAGUUUUGUAAGCGUAACCAGCUUUCCAAACUGAACUUUCUAUACUAGUUAAGUUUGGUAUGUUUAAGGCAUGUGCUUUCUUUCAUCGGUCAGUUACUUAGCCAGCAAAGUUGAGGAACUUUAGUCACAUUUAGAAGAUGUUGAAAAUUGGGGGGAGGGAUUAAUAUUUUAUUGUGAUUUUUUUAUCUAUCAUAUUUGGCCAGCUAACCUCAUCUUAGGUUUGCAUAUGGCACUGUUCCGAUGGAUUGAUGUCUGUUAGAGUUUCUGUCGAAUAUGUGUACAUAAUUAGUUACUGUUUAGGAUUUGGAGUUGUACUAGGUAUAGGAAUAGUGUAAAAGUCGCACUCUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

471

LEP:

95.73%

ME_num:

20

MEP:

4.07%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.95

Avg Expression:

1.08

Tip: OSA-PHAS112937361 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h-4.780619013063890.00237940945843629
2IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h-4.436507726419670.00615451916748533
3IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h-4.141585877525550.00307462014144592
4IR64 // panicle // Dawn--/--IR64 // panicle // Dusk-5.374537968909170.000413943438802136