Chr:
Chr12
Start:
14160158
End:
14163474
Strand:
+
Ref_name:
LOC112937341
Sequence
(XR_003239856.1):
UUCACUCUAGCAAUGCAACAUCAGGUCAAUAGUUGACGCCUCUUGAUGGUGGCAUUUAUCGUUGGUGAUGCCUCCUCUUCCUGCGAGGAACUGGCUUUUAAUGGAGAAAACUGAGGCAACAGUGACACAAGCAGCGGUGUCCUUGCUGUCUUCACCGGAAGGGCAGCCCCGCCUCCCUGGGAGAAAGGUGUUGUCAGUGUGGAGUUGCUGCUGAUUGCAGCCGGCGAUGAAAACUCAAGAUGUAUAUCCAUCCGAUAGCAGCCAUUGUAGAAGUUGCGUCCGUGGAAGGUUUUUUGUCCAUACUCCGCAUCCUCAUGAGAUUGGAAUUGAACCGAAGCUUUCACACGUGUUUCCAUCUCAUACAUGUAAAUCCUCGAUGGAGUAGAUCCUCUGUCACUGGAUAGAGCAGAUUGCUCAUAGUGACAUGGAGAACUUGUUCGGCAUCGGAAGCUAUGGUGAGUGCCUUUGAUACCAAGUUGUCAUGACCCGAGACCAUGACAGGAUAAACACCACCGGGAAGAUAGCCGGGCGGCAUCGGCUCCUGGAGAAGGGAUGUAGAUUUAUGCUAGAGAGAAGAACAUUACUGGGAGGGAGAGAUUAGACUAAUUGAUAGAUGGUAUAGCUUGACCCUUAAGUAAGAAUUCAAUCUAAUUUUAUCUCUAACUUAACUAAUAAUCUUAUCUCUAACUUAAUUGAUAAUAUGGGCUGCCUACGGACCUCUGCCUUCUGGCCCAAUGCGAAUGACAUGAGGCAUGGUUUAUUGUUGCUGAAAGGGAGCUUCCUAUCGUUGAUGGAGUUAUUUGUGAGUUGAAAAUUGAAAUACCUUGGUGUGCAUCAAUUUCUUGAGCAGCCUACUGGACUCUGUUUUGCAUAUUUUUCAGAAAAUAUCGUGCAUCUAAAAUGAAAGCGGAUGGAUCAUUCUAACUGAUGGAUGAAUACGCCAAGAAUUUAUGAGAAGUUGUACUACGACAAAAAUAUUCGAUAGCGAUACAUUAGUAGAGACAAUUUUCGAAUCAUCUCUAUAUUGAAAUAUAGAGUUCCGUAACCUAUUAACAAGUUAUAGAGGCAAUUUUAAAAUCGUCUACAAUAGUUCUGCGUUAAAGAAAUUUUUUAGGCACUCUUGACAUCUACUAGAUGUAUUUGCUAAUUUUGUCUUGUAGAGGCAUUUUUAGGCUCUCAAUCAUUCGUGUCAGUUUGUAUAACUAAACGGGCCUUGCAAGUAGGAUACCAUGCAGACAUAAGAGAAAGGUGAGAGUCCGCUAUGAAUAUAUGUGACGACAUUGAGGACAGCUUUGCAUGGAUAUGAUUGUAAGAUGGAAAGUUAUGGGUGUCACAUGCCAUUUAUAUUUCUCCGUCUAGUGAUUUGGGGAGAUUUAAUUGCGUAUUCCUUGUUUUCUUGGGUACGAAAGCUUCAAUAUUAGGAGUACACACAUGUCCUUUUUAUGGCUAUGUGUCAUGUUUUUAAAUUAUUAGAACUUUUGGUUAUGUGCAUUAGAGGCUGGAGAUGUAAUUCUCAUGUUACUUAUCUAAAAGAAGCCUUUUUGCCUCUGACAACUUUCAACCCUAUGUGGAGGACAUGUAUGCACAUGUUUAUGUGACAUUGUGUAAUCCAUGUCAAAUUGUACCCUUCGAAACAGGUUUGCACCAUAUCGACACAGGUUCUGUAAGUAAUAACCGAUAUGGUUAACAAAUUGAUAUCGUUGUAAUCAUUAGGACGCCUAUGAGUACAAUUCCAUACUACACAUAACAUUUGCCUUCUCUUGUUGAAGGGAAAUAUGGAUUAUCUUGACUUGAAAAAUAUAUGCAGAUCAAAAUCCAUCCCACGGUUGUGUACGGCUUCACAUAUAUAUGAAGUAUGGUUCUGUGUACGAAAUCGUUUCAGAGGACAAUAUGAUCUAAUACUGCACUCUAGUACAACAAAGUUCCUCCAGGUAGGUAUUGGAGAAUGCCAAGCUAUAGUGACAUGAAUUGGAAGCUGACUAACAUGUUGUGACAUAGAUGAAGUUGAACUAAAGACACUAGCACUAGUAUUCGUGGUGACUUCUCGUCACUCUUGAGUAACCAUUUCUUUUCCAGGAGCUUCUCAUUCCUAGGAUAUUUGACUUCUAAUUAAUUUCAAUGAACUGACCUCAAUGUGCUAACUGUUUAUUGUGGCUUUUCAAAAGUCCUCGAGCUGGUGGAAUAAUCAAGUCGGUUAGAGUUCUCUAGAAUCCAAGACAUAUUAUUGAAGCAGUUUAUCAAGCUAAGUGGAAUGAGUCACAAACUUGUGGUACAUUCUAGUCUCGUUGUACAAUGCCAACCAGUUCCCCUCUAUCCAUAGAUUACACUGGCUAUAUAUAAGGCUUGAUGGAUGACAAUGCGAAGGCUAUAAAGUAAUGGAAAACCAUAUCUAUCAUACUUUCAAUGGUUUAUUAUUACAGGACGUAGAGGUCGGUGGAUGGAGACUUGAUAUUAAGUAGGCCGGGCAACACUCUAUAGUAUGUAUUUUGCAUUUGAAGAAAAUCCAUUGUAUUUAUAAAUGAAUUUUUUUAUUAAUCUCAGAAAACAACAUCAAGAUAUCGAUGAUAUAAUUAAUCUAGGACCAAAUAUAGGCUCUACAUAGUUAGAACGUACACAAUCUAUAAUUAUAAAACAAGGAAGAAUGAUGUGACAAAAAGAUAUCAAGCCGUAGCGAGUUAUAACCACAAACAAUCUUUAUCAUUAUACUCAAACAUAGUAAUGUUUGGACUGUAAUAAAGGCCUCUAAAAAGGGAAUGCCGUGUGUAGGUAGUUGCCGCUGCCAUGAUCCGGUCAGCAAAUCCUAUACUAUAGGUUUUCACCACAGGAGACUACAGACUUCAACAGGGAACUGAGUGUUUGCCAUUUCUAGCUUUUGUGAUUUUUCCUGGAACUAUUUGACCAUUAUUUGAUUAUGUUACUUUCAAUUGGAUGAAACCCUAAAUUUGUGCUCGCUGCAAUUCUUCCUAAAAGAGAGGAACAGGAGGCCAGUGACAACUGACAAUCUCUGUCUUCCCUGUCAGUAGAUUUGUUAUUGUGCGAGCGUGGAGAUAGGGUGCCCACGUGGUGUGAUUUGUGUCGAUGGAGGAAAACCAAAUUAUCUUUGUGCCGCCAAGCCUCGUUUGUCUCGUCGCGAGAUUUUGGCAUUCACUCUUUUCCUUGAAAUGUAUUCUUAUGCAAUACAAUUUAUUUCCAAUAAUAGCUAUCUGCAAUACAAUUUCUUUCCAAUAGUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.46%
ME_num:
MEP:
8.33%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.85
Avg Expression:
0.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.34338045445717 | 5.08914886549638e-09 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.60696013056726 | 0.019430132410066 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.84525122915846 | 0.00482003545047803 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.96207349615318 | 0.00722152819918014 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.04643341768728 | 9.74987561159546e-06 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.9637028711279 | 0.00144971624223373 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.77196870308252 | 8.45288093804448e-08 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.25877986029295 | 0.00013410599319963 |