Chr:
Chr11
Start:
3364791
End:
3365013
Strand:
-
Ref_name:
LOC112937254
Sequence
(XR_003239769.1):
ACGACCUUACUUGAACAGGAUCUGUUCUAUAGGCUCGUACCGUUGCAUCCUUUACCAAUAAGGAGGCAAGCACUCUAGUCUGGUUGAUGGGUCCAUGACCUCUGGGCCAGAGCGUGAUUAACGGCUUGGAUGGAUCUCUGGAAGGAACCAUCUGACGGCUGUAGAGGAUCGUUCCUGACUGGUGGUACCAGUGCAGGGUGGCGCAGAGGUGGUCUGACAGACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.2%
ME_num:
MEP:
60.98%
HE_num:
HEP:
13.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.98
Avg Expression:
1543.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.07315008468545 | 2.9321088067719e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.41977843602293 | 4.29136075896598e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.34254131222055 | 1.77192557429645e-18 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.68731008557747 | 4.90491681602796e-24 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.25794855417115 | 0.000217143523406685 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.94071842522213 | 7.92784168060846e-08 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 6.70887635526862 | 0.00999868996482902 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.34585983613716 | 0.0066792928183627 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.38903644019184 | 1.03534176128829e-23 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.03665218637791 | 8.36858119938986e-11 |