Chr:
Chr11
Start:
829311
End:
833430
Strand:
+
Ref_name:
LOC112936922
Sequence
(XR_003239421.1):
UUGCAUUUAUCGCAAUUGCAUCGACGCACAUGUCUACAAGUCCGACGUCUUCCACUGUUGGAUCUAACCCAUCACAUGCACAUAAGACUUCUAGGGAUUUAUCAAGGUUCUUGACUACAAUCUCGUUCAGAGGACUGGAACAAGGCAGUGGUAACUGCUACAGAAAUCAAACAACUGGUACAGAUUAUUUCAGUCCACUAAGACUGUAAGACAUACUAUCAAUGUAGGUUCCAAUCACAAUUCACAAUUCAAUCAAACAUUCCGGCCAAACAAAUCACAUAAGAAGUAGAUCCUUCGAGUUAAAUUGCUAAAGUUUGCAAUUUUUUUCUCCGAAAAUCGACUGCAUUUUCUUUUAAGAAAGAGAGAGACAGAGUAGGGGGGAAAAAAACCUUCAUUGACUUGUUCAGAGGUUGAGAACCAGAUGCAGAAAAGAGGAUGCUGAUGUAGGGACCUGAAUCUAGACAAGUCACCGGACGAGAUAAAAAAAAGUGCAGACGUUUUGUGAUGCCCGGGACCAUCCGAUAUUCCGAUGAACAUUUUUAAGGUUUGCCACUUCUUUCAUCAGUUAUACAAAGGAUAACUUCUGAUGUCAUCUCAUAAUCUGAACUCUGAACUCUGAAGGUAGCAUUUGCGAGAAACCAGUAUUUCAGCGGGUUCAGAGAAUUCAACCCCGACCCCUCUGAUAUUUUUCAGGGACGUCGGAGUAUUAAACCCCGACCCCCACUGCUCGGAAAAUUCGACUCCGACCCCCUGUUAUUUUUCAAAGGGGUUCGGAGAAUUAAACUCCGACCCCUCUUGGCCGAGCUCAAACUCCUCCGGCGUGGCGGGGCUGAGAUUCUCCUACCACCAUUACACAAGGCAAGUGACCCUCUCCAAUCUCCUCUCCUCAUGGAGUGGCUGCACCUGCACUGCAGCAGCCAGCAGGGUUUAUGCCUUUCUCUGCUUCUUUCAGAGUCCCAGAGAAAUGCAACAUGAACAAUCCAAACUUGUGCAGCAAAAUGAACAAAAACUAGUUGCAACUGAUCUGAACUGACAAAGGACAAGUUUUUGCCAAAACUAGCAAACUAUAGGAACACCAGCAUGCACUCGCCAUUGCAUUUUCUACAAAGAAUAAACCGCGGCAAAACCACACCCGAGCUCAGAAAUGGAAGGGAAAGGAACAGCAUUGGUACAAGUUACCUCCUGCUGAUGGGGUUGCAGACGCGCGGCGAGGCGGCGAGCUUGGCGGCGGAGAAGGGGAACGACGCAGGGCUGUCGCUGGCCAGCCCCAUUGCUCAGCCUCAGAUACCAAACCCUCCUGUUUCUUCUUUCCCUUCCCUUUGUGUAGAAAAGAAAAGCUCUGGGCAAUGGCGGAGCGGCGAUGAGUGAGGACGAAACAAAAGAAUAACGGCUGGUGGAGUCAUCGACGUGUGUGGCCUGUCAUCAUUAAGAUACUAGUAAUAUUUUAAACAAAUAAUUAAGAUACUAAUAAUUCAAUUCGAUGACAGACAUUCUUCCAAAAAUCCAUUCUUUAAUUCUUUCGUCUACUUUUUCUUCUUGCACAUUGCACUUGCACUCACCUACAAUUUGCCAAUAGGUCCCCCUGUCUGGCUGUCUCUGCUUUCCCUUUCUUCUAGUACAGGCCACUCAGCUGCAUGCCUGCAUGUCUGCAGAUAGGAAGAAUUGCAUCUUUCAAGGUGUAAAUUAGGGCAGUCCCAACCCAUAACAUUAGAUAUGGUUUUCAUAAACUCCACAUCAUUAAGAAACUAGUACUAGACACUACUCUUCCAAUACAAACACUACUAUUCCAUACUUCAAUUUAAUGCUACUUAUCACACAUGAUGUCUUGGAUAUUGUGUAGAAACCCUGUCUCAUGUGAGACAUGGUUUUCUUCUCUUUCCUCAUUUAUUCACUUGCCACAUCAUUUUUUGUCUUAGGUGGCAACUUAUUUAAUGCUAUGGACACCUAGUCAUUAGGUUAGCAAAGAGGGUCUGUGUGUUGGAUUAGCUGAGAAAGUGACACUGAUGGAGGAACAGUUGGCUGACUAGGGGACAAAGGCUGGUCUACUGUCAGCUUGUGGAUGCUUCAAGAAUUCAGGCUUCAUCUUAUGUGGCCAUACUACUAUUGCCAUUGCUUCUUUUUUUUUUGGUAUUUUGGAUGUAUCACAUACUAACAUUUAUUCUUUCUUUUCUCCUUAACAACUAAAUUGUGGUCUAAUUUUUACUGGCUCCCAAGUAUGUUAUGCUCUGUAUCUGUUUUAGGAGGUGAAAUUUCACAAUGUUUCAAGUGCCAUGUAACUGUAGAAAAUCCAUGCUACUGCAAUUUGUAGCAGCAUGCAGUAGAGAAUGGAGAGAGGAGUGGGGUUGAAGGCUGUCGGUGAAGGAAAUGAUUCGGAUGCUUUGGCUGCCAUGGCUCCUUGUCCACUGAUCUACUCGUACUAGAGUAGAGAGAAUGGACAGCUCUAACUUUUCUUCCUUUGGCUUUUGCUUUUGCUUUUGCAGAGAGGAUAUCGAGGAGAAGAGCUACUAGCUUUGAUCGGGCUUUGUUUGGUCAGGUCCACCAUGAGAAAGCCACAAGACAACCCGACUCGAUUACUCAGCAGCCUAUACUGCUUGUUCAUACUCCAUUGCCGGUCAGAAGCACGAACCGUGCCAUUGAUCAUUUCCUCUCACAGAUUCUUUGCAUUCAUGCUUGGCUGCCUACAGAUUUUGCACAUCAAGCAAGCAUCCAGGCUACUGUUGCGCUCGUGCAAAACUUACCCUGUCAUUUGAUCAUCGAGAAUACAUAUGAUCCAAGCAGUGAUUAUGAUUCACUUGAUCAAUCAGUCUCUCUGUCCGUGUGUGUUAUUUCCCUCCCUCCAAACUUUCUUUGUGAAAAUUUUCUUUUCAGAGAUGAGAUAGAUCAGAUGGGGAAAGGACAGCAAAGUAAAAUGCAAAUGUGCUAAA
Sequence
(XR_003239422.1):
CUUGCUUGCAUUUAUCGCAAUUGCAUCGACGCACAUGUCUACAAGUCCGACGUCUUCCACUGUUGGAUCUAACCCAUCACAUGCACAUAAGACUUCUAGGGAUUUAUCAAGGUUCUUGACUACAAUCUCGUUCAGAUGCAGAAAAGAGGAUGCUGAUGUAGGGACCUGAAUCUAGACAAGUCACCGGACGAGAUAAAAAAAAGUGCAGACGUUUUGUGAUGCCCGGGACCAUCCGAUAUUCCGAUGAACAUUUUUAAGGUUUGCCACUUCUUUCAUCAGUUAUACAAAGGAUAACUUCUGAUGUCAUCUCAUAAUCUGAACUCUGAACUCUGAAGGUAGCAUUUGCGAGAAACCAGUAUUUCAGCGGGUUCAGAGAAUUCAACCCCGACCCCUCUGAUAUUUUUCAGGGACGUCGGAGUAUUAAACCCCGACCCCCACUGCUCGGAAAAUUCGACUCCGACCCCCUGUUAUUUUUCAAAGGGGUUCGGAGAAUUAAACUCCGACCCCUCUUGGCCGAGCUCAAACUCCUCCGGCGUGGCGGGGCUGAGAUUCUCCUACCACCAUUACACAAGGCAAGUGACCCUCUCCAAUCUCCUCUCCUCAUGGAGUGGCUGCACCUGCACUGCAGCAGCCAGCAGGGUUUAUGCCUUUCUCUGCUUCUUUCAGAGUCCCAGAGAAAUGCAACAUGAACAAUCCAAACUUGUGCAGCAAAAUGAACAAAAACUAGUUGCAACUGAUCUGAACUGACAAAGGACAAGUUUUUGCCAAAACUAGCAAACUAUAGGAACACCAGCAUGCACUCGCCAUUGCAUUUUCUACAAAGAAUAAACCGCGGCAAAACCACACCCGAGCUCAGAAAUGGAAGGGAAAGGAACAGCAUUGGUACAAGUUACCUCCUGCUGAUGGGGUUGCAGACGCGCGGCGAGGCGGCGAGCUUGGCGGCGGAGAAGGGGAACGACGCAGGGCUGUCGCUGGCCAGCCCCAUUGCUCAGCCUCAGAUACCAAACCCUCCUGUUUCUUCUUUCCCUUCCCUUUGUGUAGAAAAGAAAAGCUCUGGGCAAUGGCGGAGCGGCGAUGAGUGAGGACGAAACAAAAGAAUAACGGCUGGUGGAGUCAUCGACGUGUGUGGCCUGUCAUCAUUAAGAUACUAGUAAUAUUUUAAACAAAUAAUUAAGAUACUAAUAAUUCAAUUCGAUGACAGACAUUCUUCCAAAAAUCCAUUCUUUAAUUCUUUCGUCUACUUUUUCUUCUUGCACAUUGCACUUGCACUCACCUACAAUUUGCCAAUAGGUCCCCCUGUCUGGCUGUCUCUGCUUUCCCUUUCUUCUAGUACAGGCCACUCAGCUGCAUGCCUGCAUGUCUGCAGAUAGGAAGAAUUGCAUCUUUCAAGGUGUAAAUUAGGGCAGUCCCAACCCAUAACAUUAGAUAUGGUUUUCAUAAACUCCACAUCAUUAAGAAACUAGUACUAGACACUACUCUUCCAAUACAAACACUACUAUUCCAUACUUCAAUUUAAUGCUACUUAUCACACAUGAUGUCUUGGAUAUUGUGUAGAAACCCUGUCUCAUGUGAGACAUGGUUUUCUUCUCUUUCCUCAUUUAUUCACUUGCCACAUCAUUUUUUGUCUUAGGUGGCAACUUAUUUAAUGCUAUGGACACCUAGUCAUUAGGUUAGCAAAGAGGGUCUGUGUGUUGGAUUAGCUGAGAAAGUGACACUGAUGGAGGAACAGUUGGCUGACUAGGGGACAAAGGCUGGUCUACUGUCAGCUUGUGGAUGCUUCAAGAAUUCAGGCUUCAUCUUAUGUGGCCAUACUACUAUUGCCAUUGCUUCUUUUUUUUUUGGUAUUUUGGAUGUAUCACAUACUAACAUUUAUUCUUUCUUUUCUCCUUAACAACUAAAUUGUGGUCUAAUUUUUACUGGCUCCCAAGUAUGUUAUGCUCUGUAUCUGUUUUAGGAGGUGAAAUUUCACAAUGUUUCAAGUGCCAUGUAACUGUAGAAAAUCCAUGCUACUGCAAUUUGUAGCAGCAUGCAGUAGAGAAUGGAGAGAGGAGUGGGGUUGAAGGCUGUCGGUGAAGGAAAUGAUUCGGAUGCUUUGGCUGCCAUGGCUCCUUGUCCACUGAUCUACUCGUACUAGAGUAGAGAGAAUGGACAGCUCUAACUUUUCUUCCUUUGGCUUUUGCUUUUGCUUUUGCAGAGAGGAUAUCGAGGAGAAGAGCUACUAGCUUUGAUCGGGCUUUGUUUGGUCAGGUCCACCAUGAGAAAGCCACAAGACAACCCGACUCGAUUACUCAGCAGCCUAUACUGCUUGUUCAUACUCCAUUGCCGGUCAGAAGCACGAACCGUGCCAUUGAUCAUUUCCUCUCACAGAUUCUUUGCAUUCAUGCUUGGCUGCCUACAGAUUUUGCACAUCAAGCAAGCAUCCAGGCUACUGUUGCGCUCGUGCAAAACUUACCCUGUCAUUUGAUCAUCGAGAAUACAUAUGAUCCAAGCAGUGAUUAUGAUUCACUUGAUCAAUCAGUCUCUCUGUCCGUGUGUGUUAUUUCCCUCCCUCCAAACUUUCUUUGUGAAAAUUUUCUUUUCAGAGAUGAGAUAGAUCAGAUGGGGAAAGGACAGCAAAGUAAAAUGCAAAUGUGCUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
44.51%
ME_num:
MEP:
52.64%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.94
Avg Expression:
15.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.28739227584704 | 0.034266113028281 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.75170418888577 | 0.00120989798494028 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.60774217807572 | 0.00170229462255134 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.52706999565829 | 0.0138737408714835 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.22408352321787 | 0.0246611656712148 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -1.66318303946091 | 0.0414324479082029 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.42472669883679 | 0.0495046244947772 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.7711381858895 | 2.29779679494655e-08 |
| 9 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.42927248757809 | 0.00828633748957963 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.55766081406817 | 1.04823342253405e-05 |
| 11 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -2.53371637000485 | 0.0369645495941572 |
| 12 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -8.04607270235345 | 9.40993045626721e-06 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.13089200587674 | 0.01398146148342 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.52317211918664 | 0.00946017876051779 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.56016285883882 | 3.56285446936183e-05 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.46340931185855 | 0.000429326559139237 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.90800929212434 | 1.08717688139962e-15 |
| 18 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.85896540355812 | 0.00105292348566168 |