Chr:
Chr11
Start:
24292374
End:
24295649
Strand:
+
Ref_name:
LOC112936868
Sequence
(XR_003239289.1):
GAAAGUUGGGGAUGCAAGGCCGCAAUUGUAUUCAGUACAUACUUGAAUGACCAGUAAAGAUAUAUGCUAUUAUGCAUGUAUCUAGCUAUUGCUACAUUUUAUGGUGUUGUAGGCCCAAAAACUGCAGCUGAUCUAAGUCAAAAGAUCAUGAAAAAACUUCAUAAUGCCAUAUUCUAAUUUUUUGAAUUGUUUGUUCAGCACAGGAGUAGUAUUUCACAACCACACAUUAAUUGGUGCAAAACCAUAAUGGACCGCAUGUUUUUCACAAUCCCAUGCAAAUGGCACAUAAAUAAGCUAUUCACAUAGCUUAAUUAUAUUUGACUCUAUAAGUGAGUUCACCGGUCAACCCACUUACACUCUUACUAUAAUGCAUGAUUAACCUCAUACCAGUACAGCAUGUUGCACCCUGCCAUCCUAUCAGUAUUUAGCCGGCGAAAAACUAAGAGGUAGCGAUUAGCGAAAGGAUCGUGGGGUAAUUAACUGGAAUGCUCGGCCACACCUUUGAUCACAGAUAGAGGCCGGAGAUGUAAUACAUUUCUAUUAUCUAAAAAAACACCUUUGAUCACAGGGAGGUUAUAUUCACAUUUCUGAAGAGAGAGAGAAGCUUCGAUGGUCGAAGCUUGUGCAUGAUUAUACAUAGUAGUUGCUAAUGUAUAUACAUACACAAGCCAUGUGAUCGAUCAGCAACGGAUGUUGAUGUGGACUCUAGAUGAUUAGGUUGAUCGAUCGAUCAGCGCUUGGGCAAUUAGGUUGUUAAUGCGGACUAUGGAUGGUUUUUUUUUCUUGGACUCUCAUCUCGGAUGUUGCGGACGAAAAAAUCCACCAAAAUUAGGUGAAGACGGACGAAAAUCCACCGGAAUCCUUACCUAUUUUUUAAUUAGGUAUAGAUUAUCAGAUAAAGGAUAAUUGGUAAUUUUCCUUAUGGAUUCACCUUAAUUGGAUGAAAUUAGAAAAAAAUGACUUUUUUUUGUUUUGAACGUAAGAAUUAAAUACAACUACGAAUCACACGUUAGUUGCAAUGAAUAUAUAUUAGCAGUUUAGCACAUGCAAUUAAAACGGCAAAGAAAGUACACUAAUUCACCGCUAAAUCGGCCUUGUUGUCUUGUCAGGAAAGGUGGAAGAACGUCCGGCCGGUCAUAAAACAAGUAAUUGAUGUCAUCCAUAAAGUUUAUAUUGUGCUGCCAGCAUACAUUUGAGUGCAGCUAGCAGAGCUCAGAUUACACACGCCGUGAUAGUCAAUCGCAAACAAAGACGGCGAGAUCAGAUUAAUAGGUAGAGGUAGAUUUUCAGUGCUCGCUUUUUAAUUCCAAGAGCUGAGAGCACAUACUGUUCUCCAGUCAAGGUUCCUAAUGCUUCCCGUGCCAAUACAAAUGCGACUAUACAUGUGAAUUAAUGGUUCGUAAACAAACAUGAAAUAUCAUGCAGCUAUAGCCAUUGUGUGUGAUCUGGAUAUAUAUUUCUGGUUGUGUUGGGGAGACAAGGUUCCUAACCUUACCUCCCGAUACGGAAAAUAAAGCACGUGAAUAUAAUAAGAUUAAUUAAGUAUUAGCCUUAAGAAAAACUUAAAAAUGGAUUAAUAUGAUUUUUUAAAGCAACUUUCAUAUAGAAAACUUUUAUAAAAAAUACACCGUUUAGUAAUUUGAAAAGCGUGCACGCGAAAAAUGAGGAAAGUGAGUUGGGAAUGAGGGGAAAAGAACACAUCUCUCACUAUACAUGCACCUCACAACUAUACAUUUCUUCCUUUUUUUUGUUCCUCACAGAAGCAUAAUAUAAGGUGCAAGCUUCUAGUGCAUAAUAUACUGCAAAUAUGCAAUGAAUUGGCAUGUGAAAAUAAAUCUCAAGGGUACCUUCAAGUUUACUGGAGUGUGCUAGCUAGCUAGCAUCUUAAACGACAUGCAGUGGAUGUGAGAUUAAUGUUAAUUGGAGAUCUAACUUUGUCAUGUGUGAUCCUUUUCUCCGAUGGCGAUCGACCAUUUUGUUUGCUGAUAACUAUGACAAUUUCUAUGACUGUUAAGUACUGACAUGUCAGCAUUCUGUUGCCAAAUAGUAGUAUAUAUCCUUUUAACUCAAACGGAGGUGAGCCCCUACAUUUUUUUUAAUUUACUUUAUAAAAACUUGCCUACAAAGUUUAGCCCGGCCGCUCGGCCCAUUUAAGCCCACCCAAAUUUAGAAGGCUAAGGUUGUGUAUAAAUGAUAUUGUUCCAAUGGUUUAUAGAUUUUUGUUGGAUGGAGUCUAGAUUCAUUAUAUUAGAAUAUGUCACAUCUAACCAAAAUUUGUUAGGGACAAUUUUGUUUUUACCCUCACUUUCAUGUCUAAUAUUGAUUUUACCCUACUUUUUAGGGUUUUUGAUUUUUUCCCUACUUUUUUGAAUCGAAAGAGACGUUUACCCCUGGUUUAAAUGGAAGUUGGUGGGACCGGGUUUAUGGCAGUAAAAAAAAUAGAGAAAUAAAGGAAAAAUGGUUUUUCGAAUUUGUGUUUUACCUUCUUACCCCUUGAAAAUAUCUAACAGUCUUUUCUUUUCACGCACACAAAUCGACUCUUCCCGAAUCGUGCGGCGGCAGCCAGGCGGUGGCGACGGCGAGUGGGCUAGGGCGCAGCUCCUCCCGCCGGCGAGCAGGAGAGGGGUAGGCAGCGGCGAGCGGCGGCCAGGCGGCGGGGAGAGGGGUAGGCGGCGGGGAGCGGGCGGCAGCCAGGCGACGGGGAGAGGAGCGUAGGCGGCGUCGAGCUUCCUUGCCGCCGGCAUCGAGCUUCCUGCGCACCUCUCUUGCCGCCGACAAAAUGGGGCUCCAGAUCGACACCCACUGCAGCCUAACGGCAGCACAGGCUCGCCGCCAACACCGCGUCCAUGGGGGCACGGUUAGAUGAGACCAUGGGGUUGUCAGGGGUAUGCGGCCGCACUCGCCGAAAGCCGAUUAACAUCCCUGAUCUCCGUGGAGGAUCAUUGUUUGGUGAGAUUAUGAGUUCGUUUGUUUGUGCUCACCAACUGUUUGAGGAAAUGCUUCCGAGAUUUCGAGUACUAUAUAGGCACUAAACAUAUCGAUUUUAAUGUUGUUGGUACAGAUAUGGCUCACUAUCUGUCCAAAUUGUAAUCUCCAAAUCUGUCAUUUAAUUUUAAAACAUAUUCAAAAAAUAAAUUUUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.36%
ME_num:
MEP:
2.44%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.94
Avg Expression:
0.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.19716956720034 | 0.0373877763941518 |
2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.49544772636563 | 0.0496816056165464 |