Chr:
Chr10
Start:
10796737
End:
10799958
Strand:
+
Ref_name:
LOC112936625
Sequence
(XM_026020772.1):
UCAGGCUCGAACUGAUGACUUCCACCACGUCAAGGUGACACUCUACCGCUGAGUUAUAUCCCUUCCCCGUCCCCUCGAGAAAGAGAAUUAACGAAUCCUAAGGCAAAGGGGCGAGAAACUCAAGGCCACCCUUCCUCCGGGCUUUCUUUCCACACUAUUAUGGAUAGUCAAAUAAUGGGAAAAAUUGGAUUCAAUUGUCAACCGGUCCUAUCGAAAAUAGGAUUGACUAUGGAUUCGAGCCAUAGCACAUGGUUUCAUAAAAUCUGUACGAUUUUCCCGAUCUAAAUCGAGCAGGUUUCCAUGAAGAAGAUCUUGUUCAGCAUGUUCUAUUCGAUACUGGUAGGAGAAGAACCCGACUCGGUAUUCUUAAAAAAAGAGGGGAAGCAGAACCAAGUCAAGAUGAUAUGGGUCGCCCCUUCUUCUUGCGCCAAAGAUCUUACCAUUUCCGAAGGAACUGGGGCUACAUUUCUUUUCAAUUUCCAUUCAAGAGUUUCUAUCUGUUUCCACGCCCUUUUUUGAGACCUCGAAACAUGAAAUGGACAAAUUCCUUCUCUUAGGAACACAUACAAGAAAAAGGAUAAUGGUAGCCCUCCCAUUAACUACUUCAUUUUCAUUUAUGAAUUUCAUAGUAAUAGAAAUCCAUGUCCUACCGAGACAGAAUUUCGAACUUGCUAUCCUCUUGCCUAAUAGGCAAAGAUUGACCUCUGUAGAAAGACUGAUUCAUUCGGAUCGAUAUGAGGACCCAACUACGUUGCAUUGCCAGAAUCCAUGUUCCAUAUUUGAAGAGGGUUGACCUCUGUGCUUCUCUCAUGGUACAAUCCUCUUCCUGCUGAGCCCCCUUUCUCCUCGGUCCACAGAGAAAAAAUGGAGGACUGGUGCCGACAGUUCAUCACGGAAGAAAGAACUCACAGAGCCGGGAUCGCUAACUAAUAGAAUAGUACUACUAACUAAUACUAAUAUAUAGAAAUAGAUAUCUAGAAAUAGAAACGAACUAAUAUAUAGAUAAUCGAAAUUGAAAAGAACUGUCUUUUCUGUAUACUUUCCCCGUUCUAUUGCUACCGCGGGUCUUAUGCAAUCGAUCGGAUCAUAUAGAUAUCCCUUCAACACAACAUAGGUCAUCGAAAGGAUCUCGGACGACUCACCAAAGCACGAAAGCCAGUUAGAAAAUGGAUUCCUAUUUGAAGAGUGCCUAACCGCAUGGAUAAGCUCACAUUAACCCGUCAAUUUUGGAUCCAAUUCGGGAUUUUUCUUGGGAAGUUUCGGGAAGAAAUUGGAAUGGAAUAAUAUAGAUUCAUACAGAGGAAAAGGUUCUCUAUUGAUGCAAACGCUGUACCUAGAGGAUAGGGAUAGAGGAAGAGGGAAAAAUCGAAAUGAAAUAAAUAAAGAAUAAAGCAAAAAAAAAAAAGUCAAAGAUAGAAGAGCCCAGAUUCCAAAUGAAGAAAUGGAAACUCGAAAAGGAUCCUUCUGAUUCUCAAAGAAUGAGGGGCAAGGGGAUUGAUACCGAGAAAGAUUUCUUCUUAUUAUAAGACGUGAUUUGAUCCGCAUAUGUUUGGUAAAAGAACAAUCUUCUCCUUUAAUCAUAAAUGGAAAGUGUUCAAUUAGAACAUGAAAACGUGACUCAAUUGGUCUUAGUUAGUCUUCGGGACGGAGUGGAAGAAGGGCGGAGACUCUCGAACGAGGAAAAGGAUCCCUUCGAAAGAAUUGAACGAGGAGCCGUAUGAGGUGAAAAUCUCAUGUACGGUUCUGUAGAGGGACAGGAAGGGUGACUUAUCUGUCGACUUUUCCACUAUCAACCCCAAAAAACCCAACUCUGCCUUACGUAAAGUUGCCAGAGUACGAUUAACCUCUGGAUUUGAAAUCACUGCUUAUAUACCUGGUAUUGGCCAUAAUUUACAAGAACAUUCUGUAGUAUUAGUAAGAGGAGGAAGGGUUAAGGAUUUACCCGGUGUGAGAUAUCGCAUUAUUCGAGGAGCCCUAGAUGCUGUCGCAGUAAAGAAUCGUCAACAAGGGCGUUCUAAAUAUGGGGUCAAAAAGCCAAAAAAAUAAGUGAUUCGUUUUUAGCCCUUAUAAAAAGAAAACGGAUUCUUGAACCUCUUUCACGCUCAUGUCACGUCGAGGUACUGCAGAAAAAAGAACUGCAAAAUCCGAUCCAAUUUUUCGUAAUCGAUUAGUUAACAUGGUGGUUAACCGUAUUAUGAAAGACGGAAAAAAAUCAUUGGCUUAUCAAAUUCUCUAUCGAGCCGUGAAAAAGAUUCAACAAAAGACAGAAACAAAUCCACUAUUGGUUUUACGUCAAGCAAUACGUAGAGUAACUCCCAAUAUAGGAGUAAAAACAAGACGAAAUAAAAAAGGAUCGACGCGGAAAGUUCCGAUUGAAAUAGGAUCUAAACAAGGAAGAGCACUUGCCAUUCGUUGGUUAUUAGAAGCAUCCCAAAAGCGUCCGGGUCAAAAUAUGGCUUUCAAAUUAAGUUCCGAAUUAGUAGAUGCUGCCAAAGGGGGUGGGGGUGCCAUACGCAAAAAGGAAGCGACUCAUAGAAUGGCAGAGGCAAAUAGAGCUCUUGCACAUUUUCGUUAAUCCAUGAACAGAAUCUAGGUAUGUAGACACAUGGAUCCAUACAUCUCGAUCGGAAAAGAAUCAAUAGAAGGAGAAUCGGACGAUAUCUUUCUCGAAACAAACAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.64%
ME_num:
MEP:
48.98%
HE_num:
HEP:
23.17%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.86
Avg Expression:
53.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.72067744707828 | 0.00229607570827668 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.06497070244935 | 0.0432233708114656 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.58991999815535 | 3.28444460125869e-05 |