Chr:
Chr9
Start:
13954
End:
17336
Strand:
+
Ref_name:
LOC112936520
Sequence
(XR_003238826.1):
CGACCCCAGGUCAGGCGGGACUACCCGCUGAGUUUAAGCAUAUAAAUAAGCGGAGGAGAAGAAACUUACGAGGAUUCCCCUAGUAACGGCGAGCGAACCGGGAGAUGCCCAGCUUGAGAAUCGGGCGGCCGCGCCGUCCGAAUUGUAGUCUGGAGAGGCGUCCUCAGCGACGGACCGGGCCCAAGUCCCCUGGAAAGGGGCGCCUGGGAGGGUGAGAGCCCCGUCCGGCCCGGACCCUGUCGCCCCACGAGGCGCCGUCAACGAGUCGGGUUGUUUGGGAAUGCAGCCCAAAUCGGGCGGUAAACUCCGUCCAAGGCUAAAUACAGGCGAGAGACCGAUAGCGAACAAGUACCGCGAGGGAAAGAUGAAAAGGACUUUGAAAAGAGAGUCAAAGAGUGCUUGAAAUUGCCGGGAGGGAAGCGGAUGGGGGCCGGCGAUGCGCCCCGGCCGUAUGCGGAACGGCUUCGGCUGGUCCGCCGAUCGGCUCGGGGCGUGGACUGUUGUCGGCCGCGCCGGCGGCCAAAGCCCGGGGGCUCCGCGCCCCCGGCAGCCGUCGUCGGCGCAGCCGGUCACCGCGCGCCUCUGGCGCGCCCCUCGGGGCGCUGCGCCGCAACGGCCUGCGGGCUCCCCAUCCGACCCGUCUUGAAACACGGACCAAGGAGUCUGACAUGCGUGCGAGUCGACGGGUUCUGAAACCUGGGAUGCGCAAGGAAGCUGACGAGCGGGAGGCCCUCACGGGCCGCACCGCUGGCCGACCCUGAUCUUCUGUGAAGGGUUCGAGUUGGAGCACGCCUGUCGGGACCCGAAAGAUGGUGAACUAUGCCUGAGCGGGGCGAAGCCAGAGGAAACUCUGGUGGAGGCUCGAAGCGAUACUGACGUGCAAAUCGUUCGUCUGACUUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGAGCCCAUUACGAGUUCUAUCGGGUAAAGCCAAUGAUUAGAGGCAUCGGGGGCGCAACGCCCUCGACCUAUUCUCAAACUUUAAAUAGGUAGGACGGCGCGGCUGCUCCGGUGAGCCGCGCCACGGAAUCGGGAGCUCCAAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGGAAGCCUGGUUACGGUGCCGAACUGCGCGCUAACCUAGAACCCACAAAGGGUGUUGGUCGAUUAAGACAGCAGGACGGUGGUCAUGGAAGUCGAAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCCGAAAAUGGAUGGCGCUGAAGCGCGCGACCCACACCAGGCCAUCUGGGCGAGCGCCAUGCCCCGAUGAGUAGGAGGGCGCGGCGGCCGCCGCAAAACCCGGGGCGCGAGCCCGGGCGGAGCGGCCGUCGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGGCCGAAGAGGAGAAAGGUUCCAUGUGAACGGCACUUGCACAUGGGUAAGCCGAUCCUAAGGGACGGGGUAACCCCGGCAGAGAGCGCGACCACGCGCGUGCCCCGAAAGGGAAUCGGGUUAAGAUUUCCCGAGCCGGGACGUGGCGGUUGACGGCGACGUUAGGAAGUCCGGAGACGCCGGCGGGGGCCUCGGGAAGAGUUAUCUUUUCUGCUUAACGGCCCGCCAACCCUGGAAACGGUUCAGCCGGAGGUAGGGUCCAGCGGCCGGAAGAGCACCGCACGUCGCGCGGUGUCCGGUGCGCCCCCGGCGGCCCUUGAAAAUCCGGAGGACCGAGUACCGUCCACGCCCGGUCGUACUCAUAACCGCAUCAGGUCUCCAAGGUGAACAGCCUCUGGCCAAUGGAACAAUGUAGGCAAGGGAAGUCGGCAAAACGGAUCCGUAACUUCGGGAAAAGGAUUGGCUCUGAGGGCUGGGCUCGGGGGUCCCGGCCCCGAACCCGUCGGCUGCCGGCGGACUGCUCGAGCUGCUCGCGCGGCGAGAGCGGGCCGCCGCGUGCCGGCCGGGGGACGGACCGGGAACGGCCCCCUCGGGGGCCUUCCCCGGGCGUCGAACAGCCGACUCAGAACUGGUACGGACAAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCUCGCGGAUGCUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUGUCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCUUGGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCCGACUUUGUGAAAUGACUUGAGAGGUGUAGGAUAAGUGGGAGCCCUCGGGCGCAAGUGAAAUACCACUACUUUUAACGUUAUUUUACUUAUUCCGUGAGUCGGAAGCGGGGCCUGGCCCCUCCUUUUGGCUCUAAGGCCCGAGUCCCUCGGGCCGAUCCGGGCGGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAAAGAUAACGCAGGUGUCCUAAGAUGAGCUCAACGAGAACAGAAAUCUCGUGUGGAACAAAAGGGUAAAAGCUCGUUUGAUUCUGAUUUCCAGUACGAAUACGAACCGUGAAAGCGUGGCCUAUCGAUCCUUUAGACCUUCGGAGUUUGAAGCUAGAGGUGUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGUGUUGGAUUGUUCACCCACCAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGACCGUGCCGCGAUAGUAAUUCAACCUAGUACGAGAGGAACCGUUGAUUCACACAAUUGGUCAUCGCGCUUGGUUGAAAAGCCAGUGGCGCGAAGCUACCGUGUGCCGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCAAGCUAGCAAGCGGCGCCUGCGCCCGCCGCCCGCCCCGACCCACGUUAGGGGCGCAAGCCCCCAAGGGCCCGUGCCACCGGCCAAGCCGGCCCGGCCGACGCGCCGCGGCCGGCCGCCUCGAAGCUCCCUUCCCAACGGGCGGCGGGCUGAAUCCUUUGCAGACGACUUAAAUACGCGACGGGGCAUUGUAAGUGGCAGAGUGGCCUUGCUGCCACGAUCCACUGAGAUCCAGCCCCGCGUCGCACGGAUUCGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.42%
ME_num:
MEP:
0.2%
HE_num:
HEP:
98.17%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
13437.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 6.37448403078163 | 7.55283852929455e-08 |
| 2 | Nipponbare // shoot // "none,7_days_post_infection"--/--Nipponbare // shoot // "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.39099997607929 | 3.03586248265006e-06 |