Chr:
Chr9
Start:
9244996
End:
9246799
Strand:
+
Ref_name:
LOC112936466
Sequence
(XR_003238676.1):
AUUGGCUAUGCAAAUGAUUUAAUCAAAGAAUUGGUUUGAGAGUUUGUGUGAAUAUUGGUGUGAGUGCAUGUGACUAAUGUGGGUCAGGUUGUGAUAUCUGUGCCCAGAAACAGUUGUUUUGUCUGAUUGUGUGCAGGUGACUUGAGGUCAGCCUUGGUCAAUGGUAAGGACCGAGACUAUGCUCACGGAGGAGCAGAGGUCUAUUGCGGUCGGGAUACCAUGUGAGAAGGUGACUAGAGUCUGGAUUCUUGGAGGUCAACUUUGGUCAACGGUGGGGAUUGGGACUAGACUCAGGGAGGAGUUGAGGUCCAGACGGUCAAGGAUACCGGGUGACGAAGUUGGAUACAAGAUGGCAUACGGUGGAUGGAUAUCGUGUGGGAGAGAUCUUCGCAACGGGCUUCAUGAGGUGUGUGUGCAAGUACCGGUAUUCGCGAAGGGAAUUGUAAAGUUGGGGUAGUAUAUGGUGCUACAGUACACGAGGUACUGUAGCCUGCAGGUAUGCAUGCAUGUACGGUGCUGUACAGGUAUGUGUGAUCGAUACAUGCAUGGUGAAGCAUGUAUGUGUGCAUGACUGGUUGGCCGAGCAGCACGAGAGCGGCUCGGUGGGCUUCGGUGGCUGUUGGCGGCAUGCCAAGUCGGCCUAGGAGAAGCAAGGGUCCAGCUGGCAGCGAGUCGGAGAUGGUCACGCGUGGACGUCAGCUUGGGAGCGAAUCCGUUUUGGAUUUCUGGUGCGGCCAGUUGUUUGCUGCACGUUUGGAAAUUGUAAAACGUAUGGAAACUGAAGGAUGGAGUCCUAUUGUGUAUUAUUGUGUAUAGGAGUUUUACACCUACUUUGAGUAGGGGAUUUUUGUGGUAUAAAUAGAGAGGGAGCGUGAUGCUUCCUGUAUCGCUUUAGAGAGCAAUAGAGUUGAGUUUUGGUUUAGGGUUUCAAGUUUUGUCAAAAUUUUUGUAAGGAGUGCUGUUGUUGCACUUUGUAAACACAGAGAGAAGUAAUAAAGUCGUCAUCCACUUUAAGAGUUCUUCGAUUUGUGUUUCACCGGGUUUCGGCCGUCUAACCGGCAACUCACCGGUGGUCAGACCGGCGGCAUUGCGGCGGUCAGACCGGCGGGAGCGAGGCGGUCAGACUGGCGGCGGCGACAGGUGUGGAAAGCGACUUUGGCAGUCAGACCGGAGAUUCAACACCGGUCAGACCGGCGGCAUCCACUCGGUCAGACCGGUAGAUCAAUCUCGGUCAGACCGACUUCCGUCGAUUUCGAGGCUUCCUUCACAUGCUUCAUUCCGACGACUACAGCAAGGAAGCAAAGCAGCAGGAUGAAGGGAUCUGGCGAAGGCAGAUGAUUCACAUACAAAAAUGAUGGUGGCGAGAUGGCGGCGGCUUCGACUUCUCGGGAUAGCUACAGCGAGAACAACGGCAGUAGCUUCUCGAGACAGCUGCGGCGGCUGCCCGCACGGCAACAACGCGGCGGCGGCUGCUCGCGACGGCUGCGGCGACAACGCCUGCAGCAGCUUUGUCUGGCGACGGCUUCGUGCACGCGUGCAGUCGAAUGGAAUCCCCUCGUUCUUCCUGCGUGGAAGACGGAUUACAGUAGCAAACUGAAAUCGUGGAUGCGCCCGGACCUUAGCCGACCAAUUAUCUAUCUAUCUAUCGAUCUAUACUUAUACUUAUACUAAUUGGACACUUUCUACGAGCUCUCACGUUAUAGAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.92%
ME_num:
MEP:
4.07%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.72861899123281 | 0.0433763489223684 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.54414564099732 | 0.0456658017759832 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.20034636388809 | 0.0458387724151991 |