Chr:
Chr8
Start:
22325748
End:
22333638
Strand:
-
Ref_name:
LOC112936211
Sequence
(XM_026020006.1):
AUGAUGCAGUGCUUUGCCCGUUGGGCGAGCGCGCGGGACCAGCUCCGGUGUCGACUUGGGGAAGGUGGGCUCUGCGGCUGCGACCACGGCAGUUCCUGCGGCGGCAGCAACUAUGGCCUCUCCAGAUCCCUCCUCUGCCGCGCCCAGUUCCUCCUCUCCGCUGGCGCCCACCCCACCGCGGUUGCCGACGCCCUCCACCUGCUCGCUGCGCGCGCCGUCGAGGUCCUCCAUGGUAUGGCCAUCCCGGUCGAGCUCUCCGACCAUGAGACCGGCUUGACGAGCUCCUCCCGCCAGCAGUCCCUGACGAGGCUCCCAGGGCCGUCAUCCCCUAGCCAAGGCCGCUUCCUCGCCGCGCCAGCCGCUGAUGCUGCCUUCUCACCGCCCCUAGUCGGCAUCACCUCCUCGUUGGCUCAAGCCAUAUAUAUAUAUAUAUAUAUCCCGAGCACACGCAAGGGAACCAUAGAUAGGCAAGUGAAAUCCAAUCCACGAAAUAAUUUGAUCCAUGGACGGCACCGUUGUGGUAAAGGUCGUAAUUCCAGAGGAAUCAUUACCGCAAGGCAUAGAGGGGGAGGUCAUAAGCGCCUAUACCGUAAAAUCGAUUUUCGACGGAAUCAAAAAGACAUAUCUGGUAGAAUCGUAACCAUAGAAUACGACCCUAAUCGAAAUGCGUACAUUUGUCUCAUACACUAUGGGGAUGGUGAGAAGGGAUAUAUUUUACAUCCCAGAGGGGCUAUAAUUGGAGAUACUAUUGUUUCUGGUACAAAAGUUCCUAUAUCAAUGGGAAAUGCCCUACCUUUGACCGAUAUGCCCUUAGGCACGGCUAUACAUAACAUAGAAAUCACACGUGGAAGGGGUGGGCAAUUAGCUAGAGCAGCAGGUGCUGUAGCGAAACUGAUUGCAAAAGAAGGUAAAUCGGCCACUUUAAGAUUACCAUCUGGGGAGGUCCGUUUGGUAUCCCAAAACUGCUUAGCAACAGUCGGACAAGUGGGUAAUGUUGGGGUGAACCAAAAAAGUUUGGGUAGAGCCGGGUCUAAGUGUUGGCUAGGUAAACGCCCCGUAGUAAGAGAGGUAGUUAUGAACCCUGUGGACCACCCCCAUGGGGGCGGUGAAGGGAAAGCCCCCAUUGGUAGAAAAAAACCCACAACCCCUUGGGGUUAUCCUGCGCUUGGAAGAAGAACUAGGAAAAGGAAAAAAUAUAGUGAUAGUUUUAUUCUUCGUCGCCGUAAGUAAAUACGUAACUAGGAAUAUGGAAAAUUGCAUUUUUGGAAUUUGCAAUAAUGGGAUGGGCGAACGACGGGAAUUGAACCCGCGCAUGGUGGAUUCACAAUCCACUGCCUUGAUCCACUUGGCUACAUCCGCCCCUUAUCCAGCUAAAGGAUUUUCUCUUUUUUCCAUUCAUCAUUAUUCUAUUUAUUCUGACCUCCAUACUUCGAUCGAGAUAUUGGACAUCGAAUGCCACUCUUUAAAAUGGAAAAAAAGGAGUAAUCAGCUGUGACACGAAAAAAAACGAAUCCUUUUGUAGCUCAUCAUUUAUUGGCAAAAAUAGAAAAGGUCAAUAUGAAGGAGGAGAAAGAAACAAUAGUAACGUGGUCCCGGGCAUCUAGCAUUCUACCCGCAAUGGUUGGCCAUACAAUCGCGAUUCAUAAUGGAAAGGAACAUAUACCUAUUUACAUAACAAAUCCUAUGGUAGGUCGCAAAUUGGGGGAAUUCGUACCAACUCGGCAUUUCACGAGUUAUGAAAGUGCAAGAAAGGAUACUAAAUCUCGUCGUUAACUGAAUUCAGAAUAGAAAGAUUCAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.13%
ME_num:
MEP:
46.75%
HE_num:
HEP:
19.92%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.90
Avg Expression:
85.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.97364931672929 | 4.99928439505408e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.08111138706839 | 4.24424977101595e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.15921164169122 | 4.17586908511394e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.63643552841445 | 1.28728613279182e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.12986203495404 | 2.84190094507476e-14 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.22854814433563 | 1.952578484525e-11 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.67850287327744 | 0.00157941547701164 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.73926697680324 | 0.000943183028286431 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.56600721190576 | 0.000821740784833473 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 3.92227454169213 | 1.0118795109853e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.92695488181939 | 7.27477333977952e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.85026147272363 | 1.09375346072746e-12 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.89192740543061 | 3.2912815821755e-05 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.78049414266568 | 0.000167898649925824 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.52494945513637 | 0.00537063145036812 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.98342479924975 | 2.95324251423136e-05 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.15342175774244 | 4.9482465427639e-08 |