RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS107281913

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

9260720

End:

9264980

Strand:

+

Ref_name:

LOC107281913

Sequence
(XM_026027544.1):

AGGAGAAUACUUAAUAAUACGGCGAAACAUUUAUACAAAACACCUAUCCCGAGCACACGCAAGGGAACCAUAGAUAGGCAAGUGAAAUCCAAUCCACGAAAUAAUUUGAUCCAUGGACGGCACCGUUGUGGUAAAGGUCGUAAUUCCAGAGGAAUCAUUACCGCAAGGCAUAGAGGGGGAGGUCAUAAGCGCCUAUACCGUAAAAUCGAUUUUCGACGGAAUCAAAAAGACAUAUCUGGUAGAAUCGUAACCAUAGAAUACGACCCUAAUCGAAAUGCGUACAUUUGUCUCAUACACUAUGGGGAUGGUGAGAAGGGAUAUAUUUUACAUCCCAGAGGGGCUAUAAUUGGAGAUACUAUUGUUUAUGGUACAAAAGUUCCUAUAUCAAUGGGAAAUGCCCUACCUUUGACCGAUAUGCCCUUAGGCACGGCCAUACAUAACAUAGAAAUCACACGUGGAAGGGGUGGGCAAUUAGCUAGAGCAGCAGGUGCUGUAGCGAAACUGAUUGCAAAAGAAGGUAAAUCGGCCACUUUAAGAUUACCAUCUGGGGAGGUCCGUUUGGUAUCCCAAAACUGCUUAGCAACAGUCGGACAAGUGGGUAAUGUUGGGGUGAACCAAAAAAGUUUGGGUAGAGCCGGGUCUAAGUGUUGGCUAGGUAAACGCCCCGUAGUAAGAGGGGUAGUUAUGAACCCUGUGGACCACCCCCAUGGGGGCGGUGAAGGGAAAGCCCCCAUUGGUAGAAAAAAACCCACAACCCCUUGGGGUUAUCCUGCGCUUGGAAGAAGAACUAGGAAAAGGAAAAAAUAUAGUGAUAGUUUUAUUCUUCGUCGCCGUAAGUAAAUACGUAACUAGGAAUAUGGAAAAUUGCAUUUUUGGAAUUUGCAAUAAUGGGAUGGGCGAACGACGGGAAUUGAACCCGCGCAUGGUGGAUUCACAAUCCACUGCCUUGAUCCACUUGGCUACAUCCGCCCCUUAUCCAGCUAAAGGAUUUUCUCUUUUUUCCAUUCAUCAUUAUUCUAUUUAUUCUGACCUCCAUACUUCGAUCGAGAUAUUGGACAUCGAAUGCCACUCUUUAAAAUGGAAAAAAAGGAGUAAUCAGCUGUGACACGAAAAAAAACGAAUCCUUUUGUAGCUCAUCAUUUAUUGGCAAAAAUAGAAAAGGUCAAUAUGAAGGAGGAGAAAGAAACAAUAGUAACGUGGUCCCGGGCAUCUAGCAUUCUACCCGCAAUGGUUGGCCAUACAAUCGCGAUUCAUAAUGGAAAGGAACAUAUACCUAUUUACAUAACAAAUCCUAUGGUAGGUCGCAAAUUGGGGGAAUUCGUACCAACUCGGCAUUUCACGAGUUAUGAAAGUGCAAGAAAGGAUACUAAAUCUCGUCGUUAACUGAAUUCAGAAUAGAAAGAUUCAAAAUAAAAAAAAAAGAAAUAGGUAAGCGGGGAAUAACCUUAUUUAUGACAAGUUUCAAACUGGUAAAGUAUACCCCUAGGAUAAAGAAGAAGAAGAGUGGGCUAAGGAAACUCGCAAGAAAAGUACCAACCGAUCGUCUACUUAAGUUCGAACGGGUUUUCAAAGCACAAAAACGCAUCCACAUGUCCGUUUUCAAAGUACAAAGAGUUCUGGAUGAGAUUCGUUGGCGUUACUACGAAGAAACUGUUAUGAUAUUGAACCUCAUGCCUUAUCGAGCAUCUUAUCCCAUCUUAAAGUUGGUUUAUUCGGCAGCAGCAAAUGCUACUCAUUAUAGGGAUUUCGACAAAGCAAAUUUAUUCAUCACUAAAGCCGAAGUCAGUAGGAGUACUAUUAUGAAUAAAUUCAGACCUCGGGCUCGAGGACGUAGUUCUCCCAUAAAAAAAACCAUGUGUCAUAUAACAAUUGUACUAAAUAUAGUAAAGAAAUCGAAAUAAUCUUUAGAUCCAUCUAAGAUUUGAUUCCCGGUAAAAAAAAUAGAAUAGAAAAAUAUGGGACAAAAAAUAAAUCCACUUGGUUUCAGACUUGGUACAACCCAAAAUCACCAUUCCUUUUGGUUCGCACAACCAAAAAAUUAUUCUGAAGGUCUACAGGAAGAUAAAAAAAUACGGAAUUGUAUCAAGAACUAUAUACAAAAGAAUAGGAAAAAGGGCUCGAAUAGAAAAAUAGAAGCAGACUCAAGUUUCGAAGUAAUUACACAUAAUAAAAAAAUGGACUCAGGCUCAAGUUCCGAAGUAAUUACACAUAUAGAAAUUCAAAAAGAAAUCGAUACAAUCCACGUCAUAAUCCAUAUUGGAUUCCCCAAUUUAUUAAAGAAAAAAGGAGCAAUCGAAGAAUUAGAGAAAGAUCUACAAAAAGAAGUUAAUUCUGUAAACCAGAGACUUAAUAUUGGGAUCGAAAAAGUGAAAGAACCUUAUAGACAACCUAACAUUCUUGUAGAAUAUAUAGCUUUCCAAUUAAAAAAUAGAGUUUCAUUCCGAAAGGCAAUGAAAAAAGCCAUUGAAUUAACUAAAAAAACAGAUAUAAAGGGAGUAAAAGUAAAAAUUGCAGGCCGUCUCGCGGGAAAAGAAAUUGCGCGUGCCGAAUGCAUCAAAAAAGGUAGACUUCCCCUCCAAACAAUUCGCGCUAAAAUUGAUUAUUGCUGCUAUCCAAUUCGAACUAUCUAUGGAGUAUUAGGAGUUAAAAUUUGGAUAUUCGUAGACGAAGAAUAACCAACCCUGUCUUCCCAUUCUGUUCAGUAAUAGAAUAAAAAAUGACAAGAGCCUUAUUUUCCCUAAAAUCCCUGAAAAAAAGAAGAAAUUCUACCUCUUUCUAUAAGAUUUAAUGAAAAUUGAGAAAUCUUUUAAUAAAAUUGCUAUGCUUAGUGUGUGACUCGUUAGUUUUUUUUAGGGUUCAAAAAGGGGAUUAAAAAAAAAUAGAAUGAACCCUACUAUGUAAUUAUAGAAAAUGAACUAAUAACCAACCUAUUGCUUCGUAUUGUCGAGAUCCUAACUAAGAAACAGUCACUAUAUGAAUAAAUACAUCUAUCAUAAAUGAGUAAAUCUAUCAUAUACGUGUAGCAACUGCAAUUUUUUCUUUAAAAAAAAUAGGAUUCUAAGUUGUGAAGCAAAACUAAAGGGGAUGUAGAUAAAAGGAAGGAUGAUAGAAAGAAGGAAGAGAAAUAAGAAAGAUAUAGGAUUCCAAUAUGUAUGGUCUAUGAAUUACAUCAUAAAAAGCAAUGUGAUAAAGCAUCAAUAUAAUAAAAAUAACAGAGAAUUCGAAAUCGUAAUUUGAUUGAAACAAGAAAUACAAAUUUCAAGGAAUAACAAAGAGCGUCCCGAGUUAAUAAAACUGAGAAAUUGACUCGGAAAGAAAUUUUUUGGAAGCUCCAUUGCGAGAUUCAAACCUAACCAUUAAAGGAGAAGCAGUGGGAACGACAGAACCUAUGACUGGAUAGGAUUUUCUUGAAAAGAAUCCCAAUACUUCAUUGGGUGGGAUGGCGGAACAAACCAAAAAAAUUGUCUUAUUUGAUAAGGUUAUGAAUUAACAAAUAAGACAGGAAAGAGUAAAUAUUCGCCCGCGAAAUUUUUAUUGAAUUAGAAUACUUUACCGCGAUUCAAUAAGAGUAAAAUAAAAAAAGGAGAUUAAAAAAAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

130

LEP:

26.42%

ME_num:

204

MEP:

41.46%

HE_num:

157

HEP:

31.91%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.85

Avg Expression:

117.80

Tip: OSA-PHAS107281913 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.50447160266480.000152767545425932
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.768878087456563.92347060928143e-06