Chr:
Chr8
Start:
17135678
End:
17137881
Strand:
+
Ref_name:
LOC107281875
Sequence
(XR_003243724.1):
AAGUAUUGUGAAGGUCUAUUUCUAAAUUAUAAUGAGAAGCUUAAAAAAUUCGUAUUUAUCUGUCCCAAAUAGUAAUUACUGCUGUUCAGCAUCAGCCUAGAGCUUCAUAUAUACCUGUGAAAUUCCUUCCGAGGAAAACUUGACUUACCCCAAUCCCAAACACAUAAGUAAAAGAAGCUAGCUAACAUCCAUCAUAUCUGCUAGACACAUCACAAGUGCCAGGUGUAGGAGGCAUCAAGAAAGGUCUUGAGACAAUAGCGUGUCAUGCAUUUCCAACAUAUCACUCGAUCACCUACUUGACUACACUUCAGACCUCAUCCUCAAUUGACUUGUCCAGGGUAUACAUGAACAGAGCAUACCACAUCUACUGCCUGCAUGCACAGAACAUCAUUCUUGCCUCACCUUGAGUCGAAGUACCAGUAGUGGGUUUGUGUUGUGUACUGCUUGCGCUAACAUGGAGAGAGCAACAUGUUACAGUCGAGUUGGUACUGACGGUUCACUGGUACCUGAAUGUUACAGUCGAGUUGGUACUGCAGACCAUGGAUCAGUACUUUUACCUAGCUGGUUUGAUAUGGAUAAUGGAUGCAAAAGCAAUACUAUCUACUCCCUCCGUCCCGUUAUUAUAUUUGACAUUUCCGACCAGAUCGUGAAAAUUAAGGAACGUGUGAAAUUACAUAUUUGCCCCUGGGCCUUCUCCUCUCAACACGUGAGUCGCCGCUGUGACGGAAGAAAGAGGCGGAAACGCCGCCACCCCCCAACGCCGGAAACGCCGGCCGCUACGCCAGCCGCCGGGGCUCACCUCAAGAUGCCGCCGCCACCCGUACUUGCUGGAACCGUCGCCGCCACCCCUCCUUGCCGGAGCCGCCGGCGCUCUCUCCCGACGCUGCUGCUCAUAAUUGGGCACCCCAGGCCUGAGACCCAGCAGAAUUUUUAGAUAAAAUUUUACAACACUCGUAGUUCAGGCAUGCUGCAGCUGCUGCAUCUGCCAAAUUGUGCUUAUCCUGUGUAAGAAAUAGCUAUAGAUUGACUCGGCCGGGCAGUAGUACACUAGUUUAUCAAAUUUCAACGUCCAAUCUUCUGGGAAAAGAAGAUUCAGACCAUCUUUGCCAGAAGAAGUGUAUUCAUCAUCUAAUGCAACAGGACAGUAACUCCUGAGCUAUGCAAACAGGUGAGUUAUAUAAUGCUCAGACAGACAAAGAUCAUCUUAUGUUGAAUUUGGCUCAGUAAUUUUUAGUGGGCAGAUAUGCUCGGACAGACAAAGAAAGGCUGACAGUGUCUUCAGACUUGUUCAGUUGCAGUUCAACUGGAAGAGUAUGUACUGAGUGUACUCAGUUCUUGAGUUUCAUUUUAUUUACAAAAUCUGGAUUAAUCCUUCAGUAGAAACCCUGUUUGCCGCUGGGCUGCUUGAACCUUCUUGGCUUCAUCUCCUAGUAGAGCAAUAUUUUGUGCAUCAUUGCUGUGAGGUGAUAAUAGGACUGAAAAGUGACAAUAUGGUCAGAUUUUGUGAGGUGAUAAUAGGCUUGAAAAGUGAAAAUAUGGUCAGAUUUUGUGGAUGUUGAAAUUCAGAUUUUGUGAUAAUGUAGGAGAGGAAGAAUCCAAGAGCAAUUAGGAUGUGACUUUCAGACCUACAUUCAGAUUUUGUAAAUGUACUGUUCAUUUUUAAAUCUUGAAUUACUUUAGUUUUUUUGUCCUCUUAGCAGAAUUUAUGACAGAUCUUAUGAAUUCAGCAUUUCACUGUGAAUUCGCAUGACAGUAGCAGCAUUCCUUGCUAAAACCUUAGGUUGCAGCUUCAUCAAAGCAAACAACUACCAUUCUCAGGCAAACAAAGGUCUGAAGAACUCAUUAUCUCACAACCAACCUACAUUUCCUUUUGUCAUUUCUGAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
85.98%
ME_num:
MEP:
13.82%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.79
Avg Expression:
1.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.24493332798102 | 0.0203628995264169 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.34445253141336 | 0.00970729407864233 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.48373765556399 | 0.000996068213712197 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.13156296632317 | 0.0119124753299365 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.33512753461298 | 0.0310241750356752 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.83485628861652 | 0.043031637462681 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.30614634121215 | 0.0135049047988838 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.44812723792925 | 0.00550349755563864 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.18886988113907 | 0.0197090878033025 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.16153860153753 | 0.0014835998685763 |