RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS107281819

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

16194460

End:

16199307

Strand:

-

Ref_name:

LOC107281819

Sequence
(XM_015792825.2):

CAUGGGCCCCUGAUGGGCCGUCUGGCGAUCGCCGACCCUUAGACUUGAUGGGCCGGAAAGGCUUCCUCGGCCCUUGCGGGGGCGAACUUGCCAUGGCGAAGUCGUCUACCUUCGGCAGAUAGUCUUCGCCUUGCACCCUUCGCCCGAGACGCCCCUGGCCUGGCAAGGCCCUCGUGCGACUCUUCGCCUCACGCCGUUCUUGCUCCAUAGCCUUCGCCACGGGUUUCGGCAGAUCUGGUCGAAGGGCCUCAUGCCAUCCGCCAACAAGCCCCUCACGGGCAAGGGUGAGAUUGGAGCUUCGGCCGAGACCGUGCAAACCAUGUGGUAUGGUAUGUGGCGCCCCCUUUCGACCGAUGCUCCUGCCAAAACCUACAUUAUUCCUGCGAAUGAAGUUUGUUACUUGUGCGGCUAUAAGGUUUUGCCGCGCUUCGCCUCCUGCGAGUGGUGGUUAUAUAUUUUCUUUUCCCGGGCCGAACAGAACAGUGUUGGGCCUUCCCUUCGUGGGCUUUUUACUGUGCCGCUCAGACGGUGUAAAUUUACCGUUUCGCCUACCCUUGCGACACGUGGCGCUUUAUUACUGGUGGGUAGGCGAACGGUCGCCCGGGUAAGCUAUAUAUUCCACCCCUCUUUCCUUUUCACCGGUACACUCGCCAUUUUUACCGCGUGCGCCCUCUUCCUCCGUUUCUUUAUUCCACAGCGUCUCUCGACCCCUCAGGUGUUUCGCCCAUUCGCUCUCUUCGUCACCGCAUACACGCCACUCGCCAUGGCUCCUCGCAAGGCAAACCCUGCUUCGGCGAAAGGGCCGGAUCCCGGCCGAGUCGAUGACGACAGCACCGCCUUUUUGGGGGUUUCUCUUGUGGACAACGUCGAGCUGGCGAAGCUGGUCAGCUCUGGGGCGGUGGUCGAGGGGCAGGCUUUCGCCCCGGGGAAAGCCGUGGUGCCGAAGCCUCUCGACAAUCGGACGGUGGUGUUCGCCGUGUUUUUUGAGGCGGGGCUGCGGUUUCCGUGCAACGUGUUGUUGCCGGAGAUCCUUUGCCUCUUCCAGGUGGAGCUUCCGCAGCUGAGCCCGUCGGCGCUAGUUUGGAUCUCCAUCUUUGACUGGGCGUGUCGGACUUCCGGGUUUGAGCCCAGCGCCGAGCUCUUCGGCGCCAUAUUCUUCGCCACCGUGAACUCGAAGACGGUGAUUACCCCAGCUGGGACGAGGAAAACUGUGUUCGGGAGUGUGAAUUUCAACGUUCGCCCCGAGUGGUCCGGCCGAAGCGGCGUUUAUAACCGACGCCUCGGUUAAGUCUUGAACUUGGCACCGGGCUUGCGAGAAGCGACGCAUGUACUCCCUUAUCGACUCCUCCGGCCUUUGGCGAAUGCCGAGAAGGUGUUGCUGCGUCUUCGGCUCCUCAUAGGUGCCUCGAAAGUUAAGGACAAAAACAUCGCGCAAUUGCUCCCAUGAGUAAAUGCUAUUGGUUGGUAAAUUGAAAUACCAAGAACGGGCGAUGCCGUCUAGAGCGAGAUGUAUUAUCUUCGCCUUGGUAUUUUCGUCACCAUGAGCCGCUUCGAUCGCUGACUCGUAGAUGGAGAGGAACUCCUUCGGGUCGGUUUCGCCCGAAUAGCGUUGGACGGGUGGGAACUUGAACUGGGGUGGGAUUGGACGAGUCUUGAUUCCCCCACUCAGCGGUAGCCCCUUUUCGCCUCCCGCCCUGUUUACCGCACCUUGCUGCGGGUACGGUGUGGCGAAGGGCGAAAUCGCAACUUGUGCGUGAGAUUGGGCCAUGGCGUUCGGCUGCCCGGCUCCAACUGGUGGUACUUGCUGAGCCACCAUGGACGGGUCAAAAAUUGGCUGUGACCACGUCAUGGCAGCUUGAAUUGGUGCUUGGUUUGUUCCGAAGCCUGGAGUCGGUGCUUGCUGCCGAGCGGUUGGCGCCUGGGCAGCGUUGACAGUCGAACUGCGGUCCUUGAUUCCACGGCGAAACUCCCAGGCCCGGCUGAAUCGGUGACAACCAAUUAAGCGUACCUUGAGUUGUACUCCCCUCCGGGCGGGCCGAUGGGGUUGUGCUUGAAAUGCAGUGGGGUUGGUUGAGUUGCUGAAGGAAAGCUUGAAGUUGUGCCUGCAGAGCCAAAGCCCCUUCCACCACUGAUUGUGGCGCUUGGCCAGGUGGUUGAUGCUGCCCGGCGAAGUACACCGGCGCUUGUGUGGCUUGUGGCGGAAAGGGCUGGGUCGUCACUUGCGGAUGGACUUGAGGUGGGACAUAGCCUACCGAAUACUGAAGGAUUGGAGCCGAUGUGGCCUUGGUCCGCCUUGCCGCCUCGUAUGCUUGUUGUUGUUCUUGCAUUUGGCGAAGCAUGUCUUGGAGCCGUGUCAUUUUCCGCCGCAUGGCUUCCAUGUCGGCUUCGUCUUGUGCUUCAGGGUCAAGGUUUAUUUGGGCCUGUUCGACGGCGAGCGCAGUUGGGGCCGCUGCCGACUGCGAUGGAGCGGCUUGGGGCACCACCGGUUGGCUUGUCGAAAGGAUCUCCGCCCUGGUCUAGAGUGCCCUUGCCACCGCAGCCGCCUUCGCCACGUCGGUCGCGUUCGGCACUUGCACAGAGGUUGCAGGGGCCGAAGGCGGUUGUGAUGGCGCUUGUGCUCCUCCAUCUUCGGCCACGGGCGCCGAAAGCUCUGCUCCUUCCUCGGCAGCCAUGUCCGGUCCGGCGUCGCUCUCCCUCCGCCUGGCAGCCUUCUCCUUCACGACCCUCUUCGGUGGCAUUCGCUCUCAGUGGUUUCGCUCGGAGGUCCCCACGGUCGGCGCCAGCUGUUGUCGAAAUGACAACUGCAUACGUCGAAAGACGUGGUUACUCAACAGUGGUUGGAAAAACGAAGUGUAUUAAGUUUUUGAAUUCUCUUCCUUUCUCCCCCUAUUACAUGGCCCUAGGGGACUAUUUAUAGCCCCAUUACAGGUUCUUACUACUAGGGUUUAGGUUGUACAGGGGAAUUUACAUGAUUACCCUUACGAAAGGGACAUUUACAGAGGUACAUAAUGUUAUAGGGUCUCAUGGGCCCCUGAUGGGCCGUCUGGUGAUCGCCAGCCCUUAGACUUGAUGGGCCGGAAAGGCUUCCUCGGCCCUUGCGGGGGCGAACUUGCCAUGGCGAAGUCGUCUUCCUUCGGCAGAUAGUCUUCGCCUUGCACCCUUCGCCCGAGACGCCCCUGGCCUAGCAAGGCCCUCGUGCGACUCUUCGCCUCACGCCGUUCUUGCUCCAUAGCCUUCGCCACGGGUUUUGGCAGAUCUGAUCGAAUUGCCUCAUGCCAUCCGCCAACAUUAGGAAUUAGACAUCUCAUAUGCACAAUGAUUUUUUCGUUCUUCGAAUGCGGGUAUCUCAGGCAAGUCUAACACCUUUCACCAAAUCUUGUUAUAUUUUCGUAAUUGCAAUCUAUAUGUAGACCUUGCAUUAAAUUAUACUUUCUGUAAUUGAAAUAAUUAUAUUGAUGGAUUGGAUUGACUGGUGGAGCAGUCGGUCAUACUAUAGAUGUAUUCUGAACUUGCUAUGGUGGUGGGGGUUCAGUUGUAUAUAUUUAUCAUCAUAAGGUUAAACAACAACUGUUAUAUGGCAUUCAAGCGCCGUAGCGAUCGUGUCGACCAUAUGACCUGGAAUGGGACAUGCUGGCUUAGUAGUUCUUUCUUAAUGGCUUUAUCCUGCGGGCUUAAGGAUUUCCGCGAAUCCCGCGAGCAUGGCCUAGCGAUGAGGGUUGCCGUUGUUGCGGAAUCCGAUUAGAUGAUGUGGAUCGCCAUUGUUGUGGGAUCCAAUGAUUCGCCGUUGUUGCGGGAAUCACCCGCAGAGAUAAUUGACAAAUGGGAUUGAUGAAAAGCUCGUGACCUUAGCCUUGUCGGCAUACACCAUGAAGUGUGCUUCAAGCGCCGAUGGGUGUGGGCAUUAAAAGGUUUAAGGCAUCUGUGGGUACAGCGACACACCUCUGCAGAGUGUAUGAAUUGUGAUAUGUCACUCACUGUUUCGGGUAGAAACUACGAACGUGGCAGGAAAGGAACCUAUCGGAGGUUCUAAUACCUGUGGUGCCUUAUAUGUAGUAGAUUUCAUAAUUACUUAAUAUGAUCUUUCGCAACACUGUUUUAUUAACAUGCAUGUAUCUCCUUGUUGGAUUAUGGGACUUUGGACAUAUUUAUAUAUAUUAGGCAGAUAGAUUAUGGGCAUGUAUUUGUUGGAUUGCUAUAGUUGGACUUGUUGAUUACCAUUCGUACUCAUCUCUUUUAUAUAUAUACAUAUAUAUAUAUGUAUAUAUAUAUACAUAUAUGUAUACAUAUAUGUAUAUCGAUAUAUAUAUAUGUAUACAUAUAUGUAUACAUAUAUUUAAUUCGUUGUAGUGUUGAGCUAACAAUUAGGUGAAGAGAAGAUUUUACAAAAUUGAUCAAGUGUGGCAUAUCUCUACAUCAACUUAAUGUUGAAGGUGAUGAAGAUCUAGAAGAGCAAGGUGCAGUUAGUGUUAUUAUUUUGGUAAAAACUAAUUUCUUAUGGUUUUUAUUUAAUGGGUUUCGCUGCAAUUGUUUCUGCUAUGCUACUUUGAUGUGCCUAUUUCUUGGUAAGUUGGUUCUUACCAAGGAAUGAGCCGUAGACCGGUAUUCUACCUCAGAAGUGGAAUACGUGGGUCCCUAUAGUUUUCACACGAAAUACACCGUUUAGCAGUUUAAAAAGCGUGCCACGUGUAAGAUCAAUGUGUGUUUUGAUUUUUAUUCUGUGAUGAACAAUUGGCAUAUGUGUGUGGUCAGGCCGACCAGGCCCGCGGUCUGACCGGCCGACGCUGAGUUGGUUUCGGUUUCGGGUUGUUUCUUUGGAUAUCCGUGAUUGUUUCAUGGUUAUGGCUUCUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

465

LEP:

94.51%

ME_num:

23

MEP:

4.67%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.95

Avg Expression:

1.78

Tip: OSA-PHAS107281819 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-7.847228879020343.90426025800221e-25
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-7.621000475969162.75315655404067e-29
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-9.988557776084211.89085231352423e-16
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-7.543404480744071.82252612408832e-17
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-10.20187617012665.46754789666873e-17
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-10.36837371867651.60859201740904e-17
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-6.614855596158711.03488197978463e-47
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-2.43923025508888.68716816427008e-33
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-10.7626050077265.39316946245261e-19
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-9.382028230852515.21388339934692e-19
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-9.696752623882992.08940296727975e-15
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-11.37426888581854.57040281925553e-21