RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS107281525

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

6641108

End:

6643582

Strand:

+

Ref_name:

LOC107281525

Sequence
(XR_003243253.1):

GCAUGUUUGAAUGAGCAUGUAGGGUUCGGAGGCACCGGGAACCAAACUGAUGCCUGAUAGCAACAAGACCUAUGGCCUCUGUCUCUCUGCAGAUAACAGCUCUGGGAGAUGGAGUCCAUGAUCUGGUUGUAAAGCAGGGUGCCUAGCAACUCUCUUAAGAACACUGCAAUGGAAAUUAAUUAGAGAGACCACCAACCCUCAAACUUGUAAUUAAAUGGAAAUUAAUUACAGAGCACGGACUGCCUCUCAAGCAGGUUGCUACCCUAUUGGCUUUGCCCAUCUACUGGACAGUGCGUCGUAUGAAGGAAGGGCUAAGCUAGCUACACAAGCAAUCGAGAGUACGAGACAACAAGAAUGUUUGUUUGUUUACAUGCUAGUACUAAUCAUAUCAUAUCAUAUUAAAUCUUUAGUUUUUUGACCCACUACCAACAGUGAAUCGACGAUUCUCAGCCCAGAAAGCCUGCUACAGUACUACAGGACCUCACCCUUCAUGCACCGUCCGAUGUCCACGGGUUCAUCGAUCCAUCCGUCUACGCCUCAUAGCCGCAUCACCCCGAUCCCCUCCGUCAUCGCUCCUAACCAAUCAGCGCACCCAUCGUCCCAAAAUCCCCAAAUCUUCAUCGCCUCCUCGUGAGGUUCGUCGGCGCCGACACCGCCAUCUUGCGGAGCCUGUGGCCAGCGUCGCCGCUUUCUUGUCGAGCCAGUGAGGGAAAUCGCGGCGCCAUCUUCGCCGCCCUCGCCGGACCAGCGUCGCCACGGAGCUAGCCGGCGGCAUCUGCCAUCGGGCAAGCGCCGCAGCCGACCGCCGCCCUCGUCUCUUCGGCGAUCCAGCAGCUGCCGCCGCCUUUCGUCUGCUAGCUGCUAACGGUUGUCCAACUAGCUCGAUCCCUGUCCGUGCUGCUCCGUGUCCUCUUUCAUUCGUCAGUUUCAGGUAUAUAUCCAUAUCACUCCUUGCAUUGUUACUUUCAUUAAUCAUUUACUAGGCAGUGCCGAUUGUUUGGAUGAUAUGAUGCUUUGGGUUUAUUAUUGCUCUUAUUAUAUUUACCACUAUCUACAGUAAAAAAAAAGUGCUCUAUUUUAGUUUGGAGUAAAUUCCUUGUGUGCCCCUGAAAAGUUAUUCAAUCUCUUACAUGCCCCUGAAACUUACUCGAUUCCUUCUAUACCCUUGAAUUUUUGAUUGGAUCCCCUACAUACCCCUACCGUUAGAUUUAGCAGCAUUCCCUGGUUAGUUUGGUUGAAAAUGUCUAUAAUACCCUUGAGGUUGGAGGAGCUGAAAACUAAGAACAUGUUUGGCAGCUGGGUUUGAAACAUUCAUGACUGCACAGUAUGUAUUCCGUGAGACUAAAAAAAUAGUGCAUAAAAUUAAUUUCAUUUUCUUUUGUUAUAGCAUUCAGUAUUUUAUAAAAAAAUAUAACAUGACAUUGGAUCUUUCAUGACCACUAACCGACACAGCCUGGGGGUAAAAGACAGUACCCCUACCCGUUUACUCAAACACCAUUGCAAUUCAUCAGCAUAUCAAGAGCAUCGGUAGCACCAUUUAAUAGGAAGAAAAUGAAAAUACAUCUAAAAGCAUUCAUACACCAUCAGCAGUACACAAAUAUAUUACUUUUUACAUCAUGAGCAUAAUAGCACAAGCCCAUAACAGUUCAAGGCAUCUGCCUGCAUAAAGUCAAACAAAUUAAUGAAGAAACACUAGCAGCAGCAGCUAUUCGCAUUUUGCUAAUCAACGCAAGGGUGUAUCUUACCGACGGCGAGGAGCAGCGGAGCAAGGAGGUAAUAGGCCGGCGUCGGAGCCCCCGAGAAGAGGGUGAGGUGACAAGAGGGAGGGCGCGGAGGAGGCAGGGAGGAGACGGCGUCGCCAUGACCGCAAGCAGAGUCGAGGCCGCGGCGGGAUGCGGACUCGUCGCCGCGGCAGGAUGCAAAGCCGCCGCCGCCCACCAGAUGCGGACCCCGCCACGCCACCGAUGGGAUGCGGACCCAGCCGCCACCGCCGACCGCAAGCAGAGCCGAGACCGCGGCGGGAUGCAGAGCCGCUGCCGCCGCCGGGAUGUGGGAGAAGGGCGGCGAUGCGCGUGCAACGAUGGCUGAAAGCUGGCGAUGUGCGGCACCGUGCGUGUGGGAACUAUUUUGGAGGAUUUGGGGAUCGGAUGUGGCCCUGUGUUACCUAGGGUUGACAGGGGCAUUUUCGCAUUUUAUGAAAAUACUGACAAGCUAACACACACAUGAACACAAACAUCUGACGGAACCCAAACGGUAGGGGUACGUAGGGGAUCCAAUCGAAAAUUCAGGGGUAUAGAAGGAAUCGAGUAAGUUUCAGGGGCAUGUAAGGGAUUGGGUAACUUUUCAGGGGCACACAAGGAAUUUACUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

412

LEP:

83.74%

ME_num:

77

MEP:

15.65%

HE_num:

2

HEP:

0.41%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.85

Avg Expression:

1.92

Tip: OSA-PHAS107281525 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.688245479615060.0318116847894372
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.844536247047180.0185439853799999