Chr:
Chr6
Start:
16437333
End:
16439176
Strand:
-
Ref_name:
LOC107281457
Sequence
(XM_015788741.2):
UCCAAAGAUACUACUUGAAAUAAUCUCAGUCAAGUAUUAUUUGAUUGAUAUAGACUGUAGUAAUGUUCUGCUAGCCUUAUUUUCAUCCUUGGUUAUUUCAUAAGUGCAGAGAAGGUUUUAUGGUGAUGUGGUACCUACAGUCUUCCUUCUAAACAAUGUUCUGCUGCUCAUGUGGAUCUUCAACUUGGAAAAUAAAUCAUUCCAGCUGAUUAGUCCUAGGUUGAUCCAUUGUACAAUAGGAACAUGUGCUCACUCGAUGAACUGGUACCAAGAAUUGGACAAGAUUCUCUCGCUUGCCACCAUUAUCCUGUCGGGAUUUGGCGAGAGAUGCGGAGAUGAGAGUGACGGAAAAGGCGACGAGAGCGGCGAUGAUCUCGGCGGCGUUUGCUCGCGCGCGCUCGACGGAAAAGUGCGGUGGCGGCUGGGGAUGACCUCGGCUCUAUCAGGGGGCAGCGCUGGACUGCGGCGGAUGUGGAAGACCUCGGCUCCGUCGGGGUCUGCGCUUGACUGCAGCGGCGGCGGAUGGGGAAGACCUCGGCUCCGGCGGUCACAGCGGUGGACUGCGGUGCCAGCGGCGGUGGAAGGGCACCACUAGUACAGAUCCUUCUAUCUGUGACGGGCUCUAAUAUGCUUAGAAAUAGCGGGCCGUCACAAGGAAGUCAUCUCAAUCGGGCCGAAAAGUGCCCGAUUGAGAUAUGGUCGCACAGACAUGUUAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.16%
ME_num:
MEP:
86.59%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.77
Avg Expression:
12.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.51143145772474 | 0.00219222729203079 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.13471236517419 | 0.0428605647545598 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.39618284277432 | 2.57722625940278e-09 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.99275806558339 | 2.90968476294057e-06 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.28437075643115 | 0.00066297420340548 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.26566871943524 | 0.00769505935795544 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.5606388966506 | 2.02203360928394e-06 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.04508077447058 | 0.00436596566652882 |
| 9 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.86707458859003 | 0.000532002374264471 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.01666219992783 | 0.00668645281710395 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.86717004762519 | 0.000551928908751424 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.86725953022325 | 0.000534548699290624 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.26378765740921 | 1.4676935031288e-08 |
| 14 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.15872295145153 | 0.0389246593073228 |