Chr:
Chr6
Start:
6712123
End:
6713873
Strand:
-
Ref_name:
LOC107281343
Sequence
(XR_003242859.1):
CAUGAAAUUGACAAAUUAUUUAUGAUCUAAGGGCAAAUUGGUGUUUGCAAUUGCGUGGAUGCUCACACUUAUUGAAGAUAGUUGGUUUACCAUGCGUGACUGUUAUAUUUUCUUAAUGGAAAAAGUACGAAUUACCCUCCCUGAACUAUCGCGGUCGUCCGAAUUAUCCCCCUAAACCACAAAACCUGAUAUUUUUCACCCAUAACUAUGCAAACCGGACGAAUUACCCCCCUUGACUAAAUUCACGGUGGUUUUGAUCUACGUAGCGUACACGUGGCAGUACAGUCAGUAUUCUAUUUGUUAAAAAAUAUAGGACCCACCUGUCAUACUCCUCUUCCAUUCUUCCUCUCUCUCUCACUCUUCCUCUCUGCGGCUACAGGCGGGGAACACGGAGCGGCGGCGGCGAGGGUUACGCGGAGGCGGCGGCGGCUGUGGCCACGACGAGCAGCCGCCCCCUGCGGCUACGGCGGUCUCGCCGACGCGGUUGCCAGAGCGUCGGGCUCCGGCGCCAGCGGCCCGACGGCACGCACGCGCAUGAAACCUAGGUCGGCAAGAGGCCUCGAUCUCUCUCUCCCAACGCCCGACGGCGUGCCCGCACGCGCAUGAGGCCUCUCUUUCUCUCUCUCUCUCCCAACGCAUACGCGCAUGAAGCCUAGGCCGGCAUCGAGGCCGGAGCGGGGAAGACGGCGGAGACGGCAUCGUCGACGUGCCCAGUUACCAAAGGUGACCUUCGCACCGACGACCUUGUCCCCAACCAUGCCCUCCGCCGCGUCAUCCAGGCAUGGUGCGUCGCCAACAACCUCCCUCCUCGCCGCCUUCCCGCAUCACCCCUCCCUGCGCCGCAAUAUUGCUCGUCUCCGGCACCGGAGACAGCAAGCCCGGUGGACAGGGAGGAGCUGAAAGCAUCGCCGGCGGCGGCGUGUCCUCUCCUGGCGACGGUGAGAUGUUCGUGUUCGACUAGAAUACACUGGAUGGAAGCGACGGCAGCCACCACCUGUGGUGGCCAGAGAGCGUCCGUAUUGUAUGCAAGAGUUGUUUGUUGCAUUUGUCGUUCGCCGCGGCGAGUGAGUCGAGUGACUCGUCGGCGUCGUCGGUCCUGCUCAACAACGUCCUGGCGGUGCUGGUGCUCGUCAUGCCGCUCGACGAGGAGGCCAUCGUGGCCAUCGGCUCGUCGAUCACCACGUCGGUGGCGCUGCUCGCCAACGUUGCCAAGCACGGCGACCUGCAGAGGAGGCUCCAGGCGGUGGUCGUCAUUAUGGAGAUCGUUUGUGUUGUCCUCGUGCUGCUCACGCAACGGCGGCGCUACCACCGCCAUUGAUCUCAACGACAACCUCGACGGGAUCAUCGAGAGUGAGAGAGAAGAGAGAGAGAGAGGAAGAAUGGAAGAGGAGUAUGACAGAUGGGUCCCACAUUUUUUUUAAUAAAUAGAAUACUGACUGGACUGUCACGUGUACACCACGUAGACCAAAACCACCGCGGAUUUGGUCGAGGGGGGUAAUUCGUCCGGUUUGCAUAGUUGAGGGUGAAGAAUGUCCGGUUUUGUGGUUUAGGGGGUAAUUCGGACGACCGCGAUAGUUCGGGGGGUAUUUCGUACUUUUUCCUUUCUUAAUCCAAUGGAUCAAAUCUAUUUAUAAUAUCACAUCAACUACUAUUGGUAAAGUGGUAAUAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.03%
ME_num:
MEP:
22.15%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.88
Avg Expression:
2.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.8678802239096 | 0.00889228480354626 |
2 | 9311 // leaf // control--/--9311 // leaf // salt | -1.59685783324043 | 2.3593297904517e-05 |