Chr:
Chr5
Start:
4305514
End:
4310873
Strand:
-
Ref_name:
LOC107281092
Sequence
(XR_003242475.1):
GAAUUACUCCAGAGUUAUGAAAUGAGUUUUGUCAUUAGUCUACAUUUAAUAAUUCUAAUUAGUGUUAAACAUCCGAUGUUAUUGGGACUGAGUUUAUACAUAUAUCACGCACAAGAUCGACCACGCAAACCGUGUCCGUGAAAUGCAACACACGCUGCUCAUUGACUUUUUUUUUUAAAUUGACGAUUGGUAAAGAAACUCGAUUUUUUUCCGCUUGCGCAGUGGCAUUUGGGCCCAAAGGCCCAAGACACACACACUCUCUCUCCCCCUCGUCGUACCACUCGCCACGCCGCCGUUGCAGGAGAAACCCUCGCCGCCGCCGCCGCCGCCCUCUUCUCCGCCGGUAGCCGCUCGCGCUUCUCGGCGACAUGGCGAGAGAGAAAUCCAAGAAGGAGGAGGAGGGAUCCAGUGCGACGAGGAAUCCGGCGGCCGAGCUCACCGAAGACCUCAUCGUCGACAUCCUCUCCCGCCUCCCCGUCAAGUCGGUCUGCCGAUGCAAGUGCGUGUCCAGGCGGUGGCGCGGCCUCAUCUCCGACCCCGACCACCGCAAGAAGCUCCCCCAAACCCUCGCCGGCUUCUUCUACAGCAGCGAGAACGAAUCGAGCUUCCCCGAUGAAGAAACAUUUCCAAUUGUCAUUUGUGAAACAUUGGUUGGCUACCUGUUGUAUCGAAUGAUUAAUGCUGGUGUUUAUUAGCUAUCCACUGUAGGCAUGUAAAAAUUCAGGAUGUUAAUCAGUGCUUAUGUUUCUUACAAUUUGACCUGUUUCAAUUCUGAUAACAUUACACCCUUGCGCUCUUGUACAUUAUCAGGUUUGAUGCUUGCUAAAAUCAUGUGAAUAUACGGUGAAAAUGCAUGAGUUUUCAUAUUGAAGAAUUCAGAGGACGUGGCAAUAGGCUUAUGUGACUUUAUGAUGAAAUGCAUGAGUUCUUAGAUAGAUAGAAGAAAUUAUGAGAAAAUUUCAUGUUUAUACCUUGAGAAACUUGAUGCAUUUGCACUAUGUGCUUUUUAUUUGUACCAUCAGGUUGCACUUGGGCGGUUGAGCCUGAAGCAGAGCAACAACAAUGCAUUCUCAGAAGGAACCGAAGAACACUUGGCUGCAGUCAGACAUCUUCUCAGGAAGGAGAAAGUGGUGAAUCUAUCAUCUGUGAGGAUGAAUAUUUCGCUGCAGCUUGAUAUGGUCAUAUGGCUUCUUGCUGAACUGAAGGAUGUGGAGGCAGGCAGGGAGAGGGAUUUCUGUUGGUUUAAUCGUGCUCCUCCAAACACCUUCUCUACUGGAGAUUCUGAUUCACCGAGCAUUUCCUUAACAAGCGAAAUGAAAAAACUUAGUUUUGACUGCCAAUCGUAUCUCAGCUUUUUGUACCAGGUCCUAUUUGAAUUGAAAUUUCAGAUAUGUUUUUGCAGGUUGUGCUCGACGAGCUGGUAAUUAAUAAAUCAAAGUUAUUUCAGCGAACUCGAUUACUGACAAAGAAAUGCUCUUCAGAUCACAAUCAAAUUCAGUAUGUGUGCCACGUGAGUAUCUCAACUCCUCACACCUAUUCCUCUCCAUUCAGUAUCAAAGCUAUCUCUCGUUAAAAAGUUCUCAUCUUAUCUCUCUCUCUCUCUCUAUUCUUAUAUCCAUCGGAUCGAACUGGAUCAUGUGUUGUUAAUGAGCCUUAGGUCCGUUCAUUAGCAUAUAAUUAGUUUUUUUUAUCUGAGCAUAUAAUUAGUUGAGUAUUAACUAUUGCAACAUCGAACAAGAGUUUAUUUAAUUUUUAAAGAAACUUUUAUAUAGAAAAAAUAUUAAAAACACACCGUUUAGCUUUAAUUUUCGGAAAGCGCACUAAGAAAGUAAAACCUAACCCCUAUAUGCACAUUCGAACUCAACCUUGUAGAUUGUCGUGGUAGACCCAGAUAAAAUUUAGAAUAUUGACAAACCUAAGUAUUUGAUAUAAAAUUUUAUUUUAAAUAUUCUUUUUCUUUGAAACACAGUACAAACAUAGGCUCGUAAAACGCACACUCAUCCCAACAUAGAAUUUUAAUUUCCAAAAAUAACUUCACAACUAUUUUAUAUUAUAAGACAGAAGUAGUAUGAAUAUUUAGUGUCUACUCAUACUUGCAGUAGUACUGUGAGACUCUGGGUGUGUUUAGUUCGUCAAAAGAAAAUUUUUGGGUGUCACAUCGGACGUUUGACCGGAUGUCGGAAGGGGUUUUCGGACACGAAUGAAAAAACUAAUUUCAUAACUUGCUUGGAAACCGCAAGACGAAUUUAUUAAGCCUAAUUAAUCAGUCAUUAGCACGUAUAGGUUACUAUAGCACUUAUGGCUAAUCAUGGACUAAUUAGGCUCAAAAGAUUCGUCUCGCGAUUUCCAUACAAAUUGUGCAAUUAGUUUGAGUAAAUUGCAUUGGUGGUACACAAACUUGUUAGCUGGGUGCGAUUUAAUACAUAAAUUUGUAAAAUGCUCGUUUCAGUACAUGAACUUGUCUAGUUCGUGCGAACGAGGACCAAAAUAACUUGGUAAUGUUAAUUUUACGAAGCUGAUUAGGAUGUGACGUGCAUACGUGUAGUGAGUAUGCAUAAGAUAUGCAAUAUUUAUAAAUUUGGUCUCUACUUUAUCCUUCAUCAUGGAAAUGAUGAAUUUCAUAUAUUUCUAACCCUCAUAUCAUUGCUAAGUUUUUUCUUUAUCUUUUUUCUACUAUCACUACAUCCAAUUAUUAUUUUAUCAGAGAGGUGUAUGUCUAAUAGCAACCUUCUCAGAUAUGUAUUUACGUAGUAUUCUAAUCAGCCCCUAAAUCAAUAAGAUUAGCCAUGUAGUGUUCUUUUCGCCUUUCUCCGCACGCAUCAGACAAGUUUAUGCACUAAAAUGAGCAUUUUACAUGUUCGUAUACUGGAUUGCACCCACCUGACAAGUUUGUGUACCGGCAAUACAAUUUACUCAAUUAGUUUCUUUAUCUAUAUUUAAUAAUCUAGAGUAUACAUAUAUUCAAAGAGUGUACAUAUAUUCAAAGAUUCGAUGUGACGUUUUUGGAAAAAAAAAUAUUGGGAUCUAAACAAGGCCUCUGGAUGGCUUUGCCUCACUGUCUGAAAGUGCUGGACCUACAGUACACAUAGCAACCGACAAAGCCGUACCUUGUCCGUGCAUGCAUGCAACCGACAAGCAGGAUGGAUGUAUAUGCUAGGGGGACACCAAACAUGAAUGAACUCAUCACACAAUUGGCACCAAGUUGGAUGGAUCACCAUGGAUGUGACUCCCUCCGACGAUAUUUCUAGCGUGUUUUGUGGCCUAGGAUAUCCGAGUGGUCAUGGUUUCAUCAACCUAGUUGCAGAGGAUGAUAUCGUGGUUGUUGAGAUAAAUAUAUGGUGGGUUUGGGAUGAUUACAACCGCUCUGAGUAUAUACUUCCUCCGUUUCACAAUGUAAAUCAUUCUAACAUUUCUCACAUACAUAUUGAUGUUAAUGAAUCUAGAUAGAUAGAUAGAUAUAUAUGUCUAGAUUCAUUAACAUCAAUACGAAUGUAGGAAAUACUAGAAUGACUUAUAUUGUGAAACGGAGGGAGUAUAUAGGUUGAGGGCGUGAGGCACGCUAACGUUUUGUUAUGAUUGUUUGUUUUGUAUUGGAGAUACACUAUCUAUAGCGAGAUUGUUUGCUCCAUACGUAAAAUACGCAGAUUCGUUCGUAAGAAAGUGAUGUGAAAUGUGAUACUCAUUGAAUUCUAGAGAAGCUAUAUAUAUAUAUAGGAUUCUACUAAUAACGUUUGCAUGUAUGAAAGAACUAUUGUAUUCGAUUAACUUGUUACAUAUUCAAUGAAUAUGGAUUUAUAAAGAUAUAUAGUUGUUGGCAUUAUCUUAAAAUCACAUCGAACUAUAGUUACUUAUUAGAUGUUUGUAUGGAACUUCUCCAUUCAACUAAUCUAGAUUCCUUUUUAGAUAAAUAUCAAUUUACAUAAUUUUCCACAUAUAUAUGACUAUGAAAUAUCUCCAUCGAUUUCUGUCGUCUAGAUCAUUUUCUUUCACGGAGGAGUUAUUUUCUUUCACGCUUCUUCUUGUUCCAAUUUACCGAGUCACUUGUCUCCACACAUCAUUUUCAUUCAGAUAAGAACGUACUGUACGUACAUCCACGAAAUGCCGCGUAGGCAGCGUAUAUACAUGCGCUAGACUGAUAGUGUGACGAUUAGCUAGGAAAAGUGCGUUUACAAUGCGUGAAUUAAGGCUGAGAGAUAUUUCUAAUUAAUCCAGAUGGGAACAAUAAUCGACUUGGCUUUCAGUGGUGAUGUCGCAACACUGAAAAAGUAUAUGUCGGAAAAAGUCUGUUGAUCUUUUCCCCGAAUUUUGUUAAAGUUCGUGAAAUCACUGUGGAAUUAAUUCAAACCAUGGCCCCUGCUCUCGCCUCCCCCUGUCUCCACUUGCUUAUAAGUAGAAAAUCUCAAAAUUCACAUAGAUAUGAGAAAAAUUUCCAUCAAAAUUUCCAAACAUACUCUUACACUAACAAAAUAUAUCGAUUGAAAAUUAAGACAUGACUCAUUCUGCUUAAUUUAUUCUUUACUUAUAACAAAGGGGAUUACAUUGCCCAACACCAUAGUACUCAUGUACAAACUCCCAGUGAGCCCAAUCGCAUAACCUGACAACUGAUCUAGCAAACCACAACCGUUCAUUGCAUUUAGCGAUGAAAGAGAGCUGACCACUAACCCACAUACAUGCUAUUUAAGUGGACCAACCCACCAACCACGUACUCCAUCCUUGCUAUAAAAAACAAACCUAGAAUCAGAUAUGACAUAUUAUAGUACUGUGAAUCUGGACAUAUAUAUGUCUAGAUUCGUAGUAUGAAGGUGUGUCACAUCCGAUCCUAGAUUGGUUUUUUUACGAGAGAAGGGAGUAGUAAAUAACCUAUUUUGGUGAGUUUGUACAUCAGCCUACUUGCAUCCCUAAUUGCAUUGCAGCCACACAAGCAUGUACACAAUCUCUCCUGCCUUUAGGCGCACGAGAUGUGUGCCUCCUCGCCGACGUGGAUCGCCUUCGUCGACGAUGGCACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.64%
ME_num:
MEP:
70.93%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.72
Avg Expression:
7.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.20757339602927 | 2.79238026005729e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.22695573489908 | 7.69541610883453e-06 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.44486284833308 | 0.0300229342567558 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.57095786491325 | 0.000393425697526539 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.19692552383399 | 0.00387695227997439 |
| 6 | 9311 // leaf // control--/--9311 // leaf // salt | 1.0138148325585 | 0.0158686754931384 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.96429742573094 | 0.0161628403000189 |