Chr:
Chr4
Start:
19443159
End:
19444884
Strand:
+
Ref_name:
LOC107280676
Sequence
(XM_015779551.2):
AGGCGGCGCUCGUCGGGCCGCGGCGGAGGCGGACGGCGGUGCUCGUCGGGGCCGCGAUGGAGGCGGGCUGGCCGGAGGCGGCGCCGACGCUGUGGAUGCCCGCGGCGUGACACGCGAUGGGGAUGGAUCGGAGGCGGAGGCGGCGCGAUGGAUGGGGUUGACGGCCACGUGAGGACUGAGUGGUAGUGGUGGCUUUUAGAGUUUAGCAAUUUAGUGGGCUUAUUGGGCCUCCUAGGUCUAUUGGGCCACAAUUCGGUUUUCUCGGUUAAUUCGGUUAACCAAAAACAAUAACCGAAUUGCCCGAAAAAAAUUCGGUCUUUCCAUAGCUGAGACCGAAUUACUAACCGAAUUUCUCGGUCUCGGUCUUUUCGGUUUCGGUCUCGGUCUUUUCGGUUCGGUUCUUCGGUUCGGUCUUAUUCUGGCCACCCCUAGAGGUAGGAACGUAGCUGAAGUCAUGAACCGCCCAAAGACUCUGUUUCUUGUAUCCUUCUAUAAAACUCAAAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAUGGACUACAGCAAGCAAGGCUCAUGGGACUCGUAUUCAUCACAAGUGCACAACUUGUAUCCAUACCCUCAGCCAAGGGUGUAUCCACCACCACCGGUUUCAGAGGGCUAUGGCUACCAGACCUACUUUGGUGAAGAUAACCAAGAAGCUUCUUGUGGCUGGUCACAACAACAACCAUCUGCACCAUCAGAUGGGCCUUACAACUAUGGCUACAAUGAAGAUCCAGACUGCCUCACUUUCUUAAGAGGAUGCUUGGCAGGGCUCUGCUGCUGCUGCUUGCUGGAGCGAUGCUGCUACUUCUGAUACCAUCGUCAGCCAAGAAUGGAUGUGCUUCAGCUGGAUAUAUAGUUGUCUUGGAUUAUAUUUGUAAGGUUAGGUUGUUGUGCCUAUAUGGAUGUAGUACUCCCCUCUAGUCACAAAUAAAUGUCGUUUUUUAUUUUGUUUUAAAGUAAAUAAUUAGACAGAACUUUGAUGGUUUGACCGCAUAAUUGUUUUGCAAAAAAAAAAGUUGAUAAUAUUAUGAAAGCUUUUGUCAUAACAAGUCUAGCUAUAUCAAUUUCAUAUGCCUAAAACAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
71.34%
ME_num:
MEP:
24.39%
HE_num:
HEP:
4.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.94
Avg Expression:
29.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.26216080715476 | 9.82837975580626e-58 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.22507205660713 | 4.24620524793751e-37 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.45696005480521 | 1.45391913301139e-38 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.87969614766084 | 1.62902432670572e-35 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -7.51272756249113 | 2.51080080341667e-23 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.09238519797022 | 5.05201412429745e-40 |
| 7 | Azucena // root // control--/--Azucena // root // Al | -1.95883226959027 | 0.0493200341423247 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.41039890259487 | 8.54123903786589e-44 |
| 9 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.92353181538059 | 0.0207026286898771 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -7.85445374706551 | 1.56541958580011e-31 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.85706992662114 | 1.66231835798267e-56 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.99053752924424 | 5.57478922169812e-57 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -7.37600493756409 | 7.12615063516007e-53 |