RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-PHAS107280606

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

9152165

End:

9156435

Strand:

+

Ref_name:

LOC107280606

Sequence
(XM_026024874.1):

AGGAGAAUACUUAAUAAUACGGCGAAACAUUUAUACAAAACACCUAUCCCGAGCACACGCAAGGGAACCAUAGAUAGGCAAGUGAAAUCCAAUCCACGAAAUAAUUUGAUCCAUGGACGGCACCGUUGUGGUAAAGGUCGUAAUUCCAGAGGAAUCAUUACCGCAAGGCAUAGAGGGGGAGGUCAUAAGCGCCUAUACCGUAAAAUCGAUUUUCGACGGAAUCAAAAAGACAUAUCUGGUAGAAUCGUAACCAUAGAAUACGACCCUAAUCGAAAUGCGUACAUUUGUCUCAUACACUAUGGGGAUGGUGAGAAGGGAUAUAUUUUACAUCCCAGAGGGGCUAUAAUUGGAGAUACUAUUGUUUCUGGUACAAAAGUUCCUAUAUCAAUGGGAAAUGCCCUACCUUUGACCGAUAUGCCCUUAGGCACGGCCAUACAUAACAUAGAAAUCACACGUGGAAGGGGUGGGCAAUUAGCUAGAGCAGCAGGUGCUGUAGCGAAACUGAUUGCAAAAGAAGGUAAAUCGGCCACUUUAAGAUUACCAUCUGGGGAGGUCCGUUUGGUAUCCCAAAACUGCUUAGCAACAGUCGGACAAGUGGGUAAUGUUGGGGUGAACCAAAAAAGUUUGGGUAGAGCCGGGUCUAAGUGUUGGCUAGGUAAACGCCCCGUAGUAAGAGGGGUAGUUAUGAACCCUGUGGACCACCCCCAUGGGGGCGGUGAAGGGAAAGCCCCCAUUGGUAGAAAAAAACCCACAACCCCUUGGGGUUAUCCUGCGCUUGGAAGAAGAACUAGGAAAAGGAAAAAAUAUAGUGAUAGUUUUAUUCUUCGUCGCCGUAAGUAAAUACGUAACUAGGAAUAUGGAAAAUUGCAUUUUUGGAAUUUGCAAUAAUGGGAUGGGCGAACGACGGGAAUUGAACCCGCGCAUGGUGGAUUCACAAUCCACUGCCUUGAUCCACUUGGCUACAUCCGCCCCUUAUCCAGCUAAAGGAUUUUCUCUUUUUUCCAUUCAUCAUUAUUCUAUUUAUUCUGACCUCCAUACUUCGAUCGAGAUAUUGGACAUCGAAUGCCACUCUUUAAAAUGGAAAAAAAGGAGUAAUCAGCUGUGACACGAAAAAAAACGAAUCCUUUUGUAGCUCAUCAUUUAUUGGCAAAAAUAGAAAAGGUCAAUAUGAAGGAGGAGAAAGAAACAAUAGUAACGUGGUCCCGGGCAUCUAGCAUUCUACCCGCAAUGGUUGGCCAUACAAUCGCGAUUCAUAAUGGAAAGGAACAUAUACCUAUUUACAUAACAAAUCCUAUGGUAGGUCGCAAAUUGGGGGAAUUCGUACCAACUCGGCAUUUCACGAGUUAUGAAAGUGCAAGAAAGGAUACUAAAUCUCGUCGUUAACUGAAUUCAGAAUAGAAAGAUUCAAAAUAAAAAAAAAAAAGAAAUAGGUAAGCGGGGAAUAACCUUAUUUAUGACAAGUUUCAAACUGGUAAAGUAUACCCCUAGGAUAAAGAAGAAGAAGAGUGGGCUAAGGAAACUCGCAAGAAAAGUACCAACCGAUCGUCUACUUAAGUUCGAACGGGUUUUCAAAGCACAAAAACGCAUCCACAUGUCCGUUUUCAAAGUACAAAGAGUUCUGGAUGAGAUUCGUUGGCGUUACUACGAAGAAACUGUUAUGAUAUUGAACCUCAUGCCUUAUCGAGCAUCUUAUCCCAUCUUAAAGUUGGUUUAUUCGGCAGCAGCAAAUGCUACUCAUUAUAGGGAUUUCGACAAAGCAAAUUUAUUCAUCACUAAAGCCGAAGUCAGUAGGAGUACUAUUAUGAAUAAAUUCAGACCUCGGGCUCGAGGACGUAGUUCUCCCAUAAAAAAAACCAUGUGUCAUAUAACAAUUGUACUAAAUAUAGUAAAGAAAUCAAAAUAAUCUUUAGAUCCAUCUAAGAUUUGAUUCCCGGUAAAAAAAAUAGAAUAGAAAAAUAUGGGACAAAAAAUAAAUCCACUUGGUUUCAGACUUGGUACAACCCAAAAUCACCAUUCCUUUUGGUUCGCACAACCAAAAAAUUAUUCUGAAGGUCUACAGGAAGAUAAAAAAAUACGGAAUUGUAUCAAGAACUAUAUACAAAAGAAUAGGAAAAAGGGCUCGAAUAGAAAAAUAGAAGCAGACUCAAGUUUCGAAGUAAUUACACAUAAUAAAAAAAUGGACUCAGGCUCAAGUUCCGAAGUAAUUACACAUAUAGAAAUUCAAAAAGAAAUCGAUACAAUCCACGUCAUAAUCCAUAUUGGAUUCCCCAAUUUAUUAAAGAAAAAAGGAGCAAUCGAAGAAUUAGAGAAAGAUCUACAAAAAGAAGUUAAUUCUGUAAACCAGAGACUUAAUAUUGGGAUCGAAAAAGUGAAAGAACCUUAUAGACAACCUAACAUUCUUGCAGAAUAUAUAGCUUUCCAAUUAAAAAAUAGAGUUUCAUUCCGAAAGGCAAUGAAAAAAGCCAUUGAAUUAACUAAAAAAACAGAUAUAAAGGGAGUAAAAGUAAAAAUUGCAGGCCGUCUCGCGGGAAAAGAAAUUGCGCGUGCCGAAUGCAUCAAAAAAGGUAGACUUCCCCUCCAAACAAUUCGCGCUAAAAUUGAUUAUUGCUGCUAUCCAAUUCGAACUAUCUAUGGAGUAUUAGGAGUUAAAAUUUGGAUAUUCGUAGACGAAGAAUAACCAACCCUGUCUUCCCAUUCUGUUCAGUAAUAGAAUAAAAAAUGACAAGAGCCUUAUUUUCCCUAAAAUCCCUGAAAAAAAGAAGAAAUUCUACCUCUUUCUAUAAGAUUUAAUGAAAAUUGAGAAAUCUUUUAAUAAAAUUGCUAUGCUUAGUGUGUGACUCGUUAGUUUUUUUUUAGGGUUCAAAAAGGGGAUUAAAAAAAAAUAGAAUGAACCCUACUAUGUAAUUAUAGAAAAUGAACUAAUAACCAACCUAUUGCUUCGUAUUGUCGAGAUCCUAACUAAGAAACAGUCACUAUAUGAAUAAAUACAUCUAUCAUAAAUGAGUAAAUCUAUCAUAUACGUGUAGCAACUGCAAUUUUUUCUUUAAAAAAAAAUAGGAUUCUAAGUUGUGAAGCAAAACUAAAGGGGAUGUAGAUAAAAGGAAGGAUGAUAGAAAGAAGGAAGAGAAAUAAGAAAGAUAUAGGAUUCCAAUAUGUAUGGUCUAUGAAUUACAUCAUAAAAAGCAAUGUGAUAAAGCAUCAAUAUAAUAAAAAUAACAGAGAAUUCGAAGUCGUAAUUUGAUUGAAACAAGAAAUACAAAUUUCAAGGAAUAACAAAGAGCGUCCCGAGUUAAUAAAACUGAGAAAUUGACUCGGAAAGAAAUUUUUUGGAAGCUCCAUUGCGAGAUUCAAACCUAACCAUUAAAGGAGAAGCAGUGGGAACGACAGAACCUAUGACUGGAUAGGAUUUUCUUGAAAAGAAUCCCAAUACUUCAUUGGGUGGGAUGGCGGAACAAACCAAAAAAAUUGUCUUAUUUGAUAAGGUUAUGAAUUAACAAAUAAGACAGGAAAGAGUAAAUAUUCGCCCGCGAAAUUUUUAUUGAAUUAGAAUACUUUACCGCGAUUCAAUAAGAGUAAAAUAAAAAAAGGAGAUUAAAAAAAAAAAAAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

128

LEP:

26.02%

ME_num:

198

MEP:

40.24%

HE_num:

165

HEP:

33.54%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.85

Avg Expression:

117.43

Tip: OSA-PHAS107280606 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.827847826020996.00997288603974e-09
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.194538979600243.25758748739577e-18
3IR64NIL // root // control--/--IR64NIL // root // Al1.949428885964670.018955493189302
4WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h1.954746445576776.75216919310598e-05
5Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-2.951984846870730.00121913316550035