Chr:
Chr4
Start:
9137326
End:
9139410
Strand:
-
Ref_name:
LOC107280605
Sequence
(XM_026024924.1):
AGGAGAAUACUUAAUAAUACGGCGAAACAUUUAUACAAAACACCUAUCCCGAGCACACGCAAGGGAACCAUAGAUAGGCAAGUGAAAUCCAAUCCACGAAAUAAUUUGAUCCAUGGACGGCACCGUUGUGGUAAAGGUCGUAAUUCCAGAGGAAUCAUUACCGCAAGGCAUAGAGGGGGAGGUCAUAAGCGCCUAUACCGUAAAAUCGAUUUUCGACGGAAUCAAAAAGACAUAUCUGGUAGAAUCGUAACCAUAGAAUACGACCCUAAUCGAAAUGCGUACAUUUGUCUCAUACACUAUGGGGAUGGUGAGAAGGGAUAUAUUUUACAUCCCAGAGGGGCUAUAAUUGGAGAUACUAUUGUUUCUGGUACAAAAGUUCCUAUAUCAAUGGGAAAUGCCCUACCUUUGACCGAUAUGCCCUUAGGCACGGCCAUACAUAACAUAGAAAUCACACGUGGAAGGGGUGGGCAAUUAGCUAGAGCAGCAGGUGCUGUAGCGAAACUGAUUGCAAAAGAAGGUAAAUCGGCCACUUUAAGAUUACCAUCUGGGGAGGUCCGUUUGGUAUCCCAAAACUGCUUAGCAACAGUCGGACAAGUGGGUAAUGUUGGGGUGAACCAAAAAAGUUUGGGUAGAGCCGGGUCUAAGUGUUGGCUAGGUAAACGCCCCGUAGUAAGAGGGGUAGUUAUGAACCCUGUGGACCACCCCCAUGGGGGCGGUGAAGGGAAAGCCCCCAUUGGUAGAAAAAAACCCACAACCCCUUGGGGUUAUCCUGCGCUUGGAAGAAGAACUAGGAAAAGGAAAAAAUAUAGUGAUAGUUUUAUUCUUCGUCGCCGUAAGUAAAUACGUAACUAGGAAUAUGGAAAAUUGCAUUUUUGGAAUUUGCAAUAAUGGGAUGGGCGAACGACGGGAAUUGAACCCGCGCAUGGUGGAUUCACAAUCCACUGCCUUGAUCCACUUGGCUACAUCCGCCCCUUAUCCAGCUAAAGGAUUUUCUCUUUUUUCCAUUCAUCAUUAUUCUAUUUAUUCUGACCUCCAUACUUCGAUCGAGAUAUUGGACAUCGAAUGCCACUCUUUAAAAUGGAAAAAAAGGAGUAAUCAGCUGUGACACGAAAAAAAACGAAUCCUUUUGUAGCUCAUCAUUUAUUGGCAAAAAUAGAAAAGGUCAAUAUGAAGGAGGAGAAAGAAACAAUAGUAACGUGGUCCCGGGCAUCUAGCAUUCUACCCGCAAUGGUUGGCCAUACAAUCGCGAUUCAUAAUGGAAAGGAACAUAUACCUAUUUACAUAACAAAUCCUAUGGUAGGUCGCAAAUUGGGGGAAUUCGUACCAACUCGGCAUUUCACGAGUUAUGAAAGUGCAAGAAAGGAUACUAAAUCUCGUCGUUAACUGAAUUCAGAAUAGAAAGAUUCAAAAUAAAAAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.02%
ME_num:
MEP:
47.15%
HE_num:
HEP:
26.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.89
Avg Expression:
123.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.63325657817095 | 0.0287414745867877 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.50061916327777 | 0.00330603914163185 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.00664042894601 | 0.017724149974651 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.11935188858413 | 0.0166661160236788 |